Locus 2510

Sequence ID X_DroMel_CAF1
Location 6,670,098 – 6,670,214
Length 116
Max. P 0.678850
window4102

overview

Window 2

Location 6,670,098 – 6,670,214
Length 116
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 83.83
Mean single sequence MFE -42.90
Consensus MFE -30.19
Energy contribution -30.59
Covariance contribution 0.40
Combinations/Pair 1.21
Mean z-score -1.80
Structure conservation index 0.70
SVM decision value 0.30
SVM RNA-class probability 0.678850
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6670098 116 + 22224390
G---GUGGUAAGUCGCACGACGUUGCGCAGGCGUUCGCCAACGCACUGCUGCUGCGCAACAUGAACCAUGUUGUGGGCAAAGGGCAGCCAGUGGUCCAAAAUCACCGAAAGGCUUACCA
.---.(((((((((...((..((((((((((((((....))))).))))((((.(((((((((...)))))))))))))....)))))..(((((.....)))))))...))))))))) ( -49.90)
>DroSec_CAF1 1676 113 + 1
GGUGGUGGUAAGUCGCACGACGUUGCGCAGGCGUUCGCCAAUGCACU------GCGCAACAUGAACCAUGAUAUUGGCAAAGGGCAGGCAGUGGUCCAAAAUCACCGGAAGGCUUACCA
.....(((((((((...((..((((((((((((((....))))).))------))))))).((.(((((....(((.(....).)))...))))).)).......))...))))))))) ( -46.00)
>DroSim_CAF1 1996 113 + 1
GGUGGUGGUAAGUCGCACGACGUUGCGCAGGCGUUCGCCAGUGCACU------GCGCAACAUGAACCAUGAUAUUGGCAAAGGGCAGGCAGUGGUCCAAAAUCACCGGAAGGCUUACCA
.....(((((((((...((..((((((((((((........))).))------))))))).((.(((((....(((.(....).)))...))))).)).......))...))))))))) ( -44.00)
>DroEre_CAF1 1675 116 + 1
G---GAGGUAAGACGCACGAGGUUGCGCAGGCGUUCGCCAACACACUGCUGCUGCGUAACAUGAACCAUGAUGUGGGCAAAGGGCAGGCAGGCGCCCCUAGCCAUCGGAAGGUUUACAA
.---...(((((.(...(((((((((((.(((....)))......((((((((((.((.((((...))))...)).))....)))).))))))))....)))).)))...).))))).. ( -36.40)
>DroYak_CAF1 2065 116 + 1
G---GGGGUAAGGUGCACGAUGUUGCGCAGGCGUUCGCCAACACACUGCUGCUGCGCAACAUGAACCAUGAUGUGAGCAAAGGGCAGGCUGGAGCUCAAAAUCAUAGGAAGGUUUACCA
.---..((((((.(.....(((((((((((((....)))..((......)).))))))))))...(((((((.(((((...((.....))...)))))..))))).))..).)))))). ( -38.20)
>consensus
G___GUGGUAAGUCGCACGACGUUGCGCAGGCGUUCGCCAACGCACUGCUGCUGCGCAACAUGAACCAUGAUGUGGGCAAAGGGCAGGCAGUGGUCCAAAAUCACCGGAAGGCUUACCA
......((((((((((.....(((((((((((....))).............)))))))).....((((...))))))...((((........)))).............)))))))). (-30.19 = -30.59 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:32 2006