Locus 2508

Sequence ID X_DroMel_CAF1
Location 6,667,080 – 6,667,200
Length 120
Max. P 0.500000
window4099

overview

Window 9

Location 6,667,080 – 6,667,200
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.11
Mean single sequence MFE -48.18
Consensus MFE -28.61
Energy contribution -29.45
Covariance contribution 0.84
Combinations/Pair 1.30
Mean z-score -1.70
Structure conservation index 0.59
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6667080 120 - 22224390
CCAACUUGUCGGCGGCAUUGUACAGCGCCCAGAAGUUGGGUGCCCAGUAGGCGUGCGUUAGGCCACGCUUGAAAGGAAACAGACGGGAGAGGACUUGCGGCAAUUGCUGCCAGAAGGGUC
...(((..(((((((((((((...((((((((...))))))))((..((((((((.(.....)))))))))...)).......((.(((....))).)))))).))))))).))..))). ( -47.00)
>DroVir_CAF1 623 120 - 1
CCACCUUAUCGGCAGCAUUAUAGAGCGCCCAAAUAUUGGGCGCCCAGUAGGCGUGGGUAAGUCCGCGCUUAAACGGAAACAGGCGAGACAUCAGCUGUGGCAAUUGGUGCCAGAAGGGGC
((.((((...((((.((...((.((((((((.....)))))(((...((((((((((....))))))))))...(....).))).........))).)).....)).))))..)))))). ( -50.30)
>DroPse_CAF1 1504 120 - 1
CCACCUUGUCGGCGGUGUUGUAGAGCGCCCAUAUGUUGGGGGCCCAGUAGGCGUGCGUGAGUCCCCGAUUGAAGGGGAACAGGCGGGACAUAAUCUGCGGCAGCUGAUUCCAGAAUGGGC
(((.((.((((((..(((((((((((.((((.....)))).))......(.(.(((.((..(((((.......))))).)).))).).)....)))))))))))))))...))..))).. ( -47.10)
>DroGri_CAF1 620 120 - 1
CCACUUUAUCGGCGGUGUUAUAGAGGGCCCAGAUAUUGGGUGCCCAAUAGGCGUGGGUGAGGCCACGCUUGAAAGGAAAGAGGCGCGACAUCAGCUGUGGCAACUGCUGCCAGAAGGGGC
((.((((..((((((((((((((.((((((........)).))))..(((((((((......))))))))).......................))))))).)))))))...)))))).. ( -45.70)
>DroMoj_CAF1 437 120 - 1
CCACCUUAUCGGCGGCAUUAUAGAGUGCCCAAAUGUUGGGCGCCCAGUAGGCGUGUGUGAGGCCGCGCUUGAAGGGGAACAGGCGCGACAUCAGCUGCGGCAACUGCUGCCAGAAGGGGC
((.((((...(((((((.........(((((.....)))))(((((((.(((.(.....).)))(((((((........))))))).......)))).)))...)))))))..)))))). ( -54.40)
>DroAna_CAF1 758 120 - 1
GCACCUUAUCGGCGCUAUUGUACAAAGCCCAGAAGUUGGGCGCCCAGUAGGCGUGAGUCAGUCCCCGCUUGAAGGGAAACAAGCGGGAGAGCACCUGCGGAAUCUGCUCAAAGAAGGGUC
..(((((.((.((.((((((......((((((...))))))...)))))))).((((.(((((((((((((........)))))))).))((....)).....)))))))..))))))). ( -44.60)
>consensus
CCACCUUAUCGGCGGCAUUAUAGAGCGCCCAGAUGUUGGGCGCCCAGUAGGCGUGCGUGAGGCCACGCUUGAAGGGAAACAGGCGGGACAUCAGCUGCGGCAACUGCUGCCAGAAGGGGC
...(((..((.((((.........(((((((.....)))))))((..((((((((........))))))))...))..................))))((((.....)))).))..))). (-28.61 = -29.45 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:30 2006