Locus 2507

Sequence ID X_DroMel_CAF1
Location 6,666,150 – 6,666,250
Length 100
Max. P 0.543840
window4098

overview

Window 8

Location 6,666,150 – 6,666,250
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 81.05
Mean single sequence MFE -30.34
Consensus MFE -18.84
Energy contribution -18.77
Covariance contribution -0.06
Combinations/Pair 1.28
Mean z-score -1.74
Structure conservation index 0.62
SVM decision value 0.02
SVM RNA-class probability 0.543840
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6666150 100 - 22224390
CUUGAAAGCGGGCAGAAUGCGAUUGUCGAUUGUGCCGGCUAAAUGUGGCUUGGAAGUAGCCAGUUAGCCCGACUAAAAGCUAUCGUUAUCGGGCUGUCCA
......(((.((((.(((.((.....))))).)))).))).....(((((.......)))))..((((((((.....(((....))).)))))))).... ( -34.10)
>DroSec_CAF1 14943 91 - 1
CUUGAAAGCGGGCAGAAUGCAAUUGUC---------GGCUAAAUUUGGCUUGGAAGUAGCCAGGUGGCCUGACUAAUGGCUAUCGUUAUCGGGCUAUACA
......(((.(((((.......)))))---------.)))....((((((.......))))))(((((((((.(((((.....))))))))))))))... ( -30.50)
>DroSim_CAF1 21518 91 - 1
CUUAAAAGCGGGCAGAAUGCGAUUGUC---------GGCUAAAUUUGGCUUGGAAGUAGCCAGGUGGCCUGACUAAUGGCUAUCGUUAUCGGGCUAUACA
......(((.(((((.......)))))---------.)))....((((((.......))))))(((((((((.(((((.....))))))))))))))... ( -30.50)
>DroYak_CAF1 17251 100 - 1
CUUGAAAGUGGACGAAAUGCGAUUAUCGAUGGUGCAAGCUAGAUCUGGCUUGGAAGUAGCCAGGUAGCCCAAAUAAAAGCUAUCGUUAUCGAACUGGCCA
........(((........((((...(((((((....(((..((((((((.......)))))))))))..........)))))))..))))......))) ( -26.28)
>consensus
CUUGAAAGCGGGCAGAAUGCGAUUGUC_________GGCUAAAUUUGGCUUGGAAGUAGCCAGGUAGCCCGACUAAAAGCUAUCGUUAUCGGGCUAUACA
(((((.(((((((((.......))))).........(((((...((((((.......)))))).)))))..............)))).)))))....... (-18.84 = -18.77 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:29 2006