Locus 2502

Sequence ID X_DroMel_CAF1
Location 6,649,313 – 6,649,410
Length 97
Max. P 0.562528
window4091

overview

Window 1

Location 6,649,313 – 6,649,410
Length 97
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 92.79
Mean single sequence MFE -26.20
Consensus MFE -25.00
Energy contribution -25.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.95
SVM decision value 0.06
SVM RNA-class probability 0.562528
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6649313 97 - 22224390
---UUUUUUCGCUUUUCCUU----CGUUUCCUUUUCCUUAUUUUUUGCAGCACACACCCUGGCGCCGGCAGAAGAAGAAGAGGAAGAAUCCAAAGCGGCGGCAA
---.....(((((((...((----(...((((((((....((((((((.((.((.....))))....)))))))).)))))))).)))...)))))))...... ( -26.70)
>DroSim_CAF1 531 104 - 1
UUCUUUUCUCGCUUUUCCUUUCCUUAUUUCCUUUUCCUUAUUUUUUGCAGCACACACCCUGGCGCCGGCAGAAGAAGAAGAGGAAGAAUCCAAAGCGGCGGCAA
........(((((((....(((.....(((((((((....((((((((.((.((.....))))....)))))))).))))))))))))...)))))))...... ( -25.30)
>DroYak_CAF1 516 97 - 1
---UUUUCUCGCUUUUCCUU----CGUUUCCUUUUCCUUAUUUUUUGCAGCACACACCCUGGCGCCGGCAGAAGAAGAAGAGGAAGAAUUCAAAGCGGCGGCAA
---.....(((((((...((----(...((((((((....((((((((.((.((.....))))....)))))))).)))))))).)))...)))))))...... ( -26.60)
>consensus
___UUUUCUCGCUUUUCCUU____CGUUUCCUUUUCCUUAUUUUUUGCAGCACACACCCUGGCGCCGGCAGAAGAAGAAGAGGAAGAAUCCAAAGCGGCGGCAA
..........(((.(..(((......((((((((((....((((((((.((.((.....))))....)))))))).))))))))))......)))..).))).. (-25.00 = -25.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:23 2006