Locus 2501

Sequence ID X_DroMel_CAF1
Location 6,641,105 – 6,641,196
Length 91
Max. P 0.999972
window4090

overview

Window 0

Location 6,641,105 – 6,641,196
Length 91
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 70.02
Mean single sequence MFE -24.07
Consensus MFE -17.15
Energy contribution -19.27
Covariance contribution 2.13
Combinations/Pair 1.25
Mean z-score -2.97
Structure conservation index 0.71
SVM decision value 5.07
SVM RNA-class probability 0.999972
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6641105 91 + 22224390
AAUG----CUUUUGGUUAUUCAAAAAUGUUUUUGGACACUCAUCAUC---------AUGAUGAUAAGCCAUGUUGUACAUACAUAUAUGUAUGACGAAUGAUCU
....----.....((((((((...........(((....(((((...---------..)))))....))).((..((((((....))))))..)))))))))). ( -25.10)
>DroSec_CAF1 34928 88 + 1
AAUG----CUCUUGGUUAUUCAAAAAUUUAUUUGGACACUCAUUAGUCG----------AUGAUAAGCCAUGUUGUACAUAU--GUAUGUAUGACGAAUGAUCU
....----.....((((((((...........(((....(((((....)----------))))....))).((..(((((..--..)))))..)))))))))). ( -21.60)
>DroSim_CAF1 32748 98 + 1
AAUU----CUCUUGGUUAUUCAAAAAUUUAUUUGGACACUCAUCAGUCGGAAGGCGAUGAUGAUAAGCCAUGUUGUACAUAC--GUAUGUAUGACGAAUGAUCU
....----.....((((((((...........(((....(((((((((....)))..))))))....))).((..(((((..--..)))))..)))))))))). ( -30.40)
>DroEre_CAF1 28644 93 + 1
AAUGUGUAUUCCUGGGUAUUCCAAAU----UUCGGACACUCAUUAGUCAUA-GUUAUUGGCGAUAAGCCAUAUACCAUAC------ACAAAUCAUGAAUAAUCG
..(((((((...(((((..(((....----...))).))))).........-((...((((.....))))...)).))))------)))............... ( -19.20)
>consensus
AAUG____CUCUUGGUUAUUCAAAAAUUUAUUUGGACACUCAUCAGUCG_______AUGAUGAUAAGCCAUGUUGUACAUAC__GUAUGUAUGACGAAUGAUCU
.............((((((((............((....((((((((........))))))))....))..((((((((((....)))))))))))))))))). (-17.15 = -19.27 +   2.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:22 2006