Locus 250

Sequence ID X_DroMel_CAF1
Location 840,837 – 840,957
Length 120
Max. P 0.803389
window378

overview

Window 8

Location 840,837 – 840,957
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.08
Mean single sequence MFE -35.90
Consensus MFE -25.94
Energy contribution -27.02
Covariance contribution 1.08
Combinations/Pair 1.13
Mean z-score -2.29
Structure conservation index 0.72
SVM decision value 0.62
SVM RNA-class probability 0.803389
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 840837 120 + 22224390
AAUCCACUUGAAGGAUGCCACAAUCUUUCGUCUGCUCCUGCGGAUUCUGGGGCUGAUGAUACGUUUUCAUCCUUGUACGCAUCUCUGUGUUGUCCUUGGUUCUCCUCGAGGUCCUUGUCU
......(((((.(((.((((.........((((((....))))))...(((((.(((((.......))))).....(((((....))))).)))))))))..)))))))).......... ( -32.80)
>DroSec_CAF1 41703 120 + 1
AAUCCACUUGAAGGAUGCCACAAUCUUUCGUCUGCUCCUGCUGAUUCUGGGGCUGAUGAUGCGUCUUCAUCCUUGUACGCAUCUCUGUGUUGUCCUUGGUUCUCCUCGAGGUCCUCGUCU
..........((((((..((((.......(((.(((((..........))))).)))(((((((...((....)).)))))))..))))..))))))((..(((...)))..))...... ( -35.70)
>DroSim_CAF1 37960 120 + 1
AAUCCACUUGAAGGAUGCCACAAUCUUUUGUUUGCUCCUGCUGAUUCUGGCGCUGAUGAUGCGUCUUCAUCCUUGUACGCAUCUCUGUGUUGUCCUUGGCUCUCCUCGAGGUCCUCGUCU
......(((((((((.((.((((....))))..))))))((..(...((((((.((.(((((((...((....)).))))))))).))))))...)..)).....))))).......... ( -32.60)
>DroEre_CAF1 41274 120 + 1
AAUCCACUCGAAGGAUGCCACAAUCUUUCGCCAGCUCCUGCUGAUUCUGGGGCUGAGGAUGCGUCUUCAUCCUUGUACGCAUCUUUGUUCAGUCCUUGGUCCUCCUCGAGGUCCUUGUCU
........((((((((......)))))))).((((....)))).....((((((((((((((((...((....)).))))))))....)))))))).((.((((...)))).))...... ( -42.90)
>DroYak_CAF1 38874 120 + 1
AAUCCACUCGGAGGAUGCCACAAUCUGUCGUCAGCUCCUGCUGAUUCUGCUCCUGCUGAUGCGUCUUCAUCCUUGUACGCAACUCUGUGCAGUCCCUGGUCCUCCUCCAAGUCCUUGUCU
.....(((.((((((.((((....((((.((((((....((.......))....))))))((((...((....)).))))........))))....))))..)))))).)))........ ( -35.50)
>consensus
AAUCCACUUGAAGGAUGCCACAAUCUUUCGUCUGCUCCUGCUGAUUCUGGGGCUGAUGAUGCGUCUUCAUCCUUGUACGCAUCUCUGUGUUGUCCUUGGUUCUCCUCGAGGUCCUUGUCU
..........((((((..((((.......((((((....))))))............(((((((...((....)).)))))))..))))..))))))((.((((...)))).))...... (-25.94 = -27.02 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:58 2006