| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 76,407 – 76,507 |
| Length | 100 |
| Max. P | 0.604510 |
| Location | 76,407 – 76,507 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 85.71 |
| Mean single sequence MFE | -20.36 |
| Consensus MFE | -13.62 |
| Energy contribution | -14.73 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 76407 100 - 22224390 AAAACUAGUCUCUCAGACUUAAAAUUUUAAAACUGUUUGCAUAAGACUUUCCCAAAAAUCUGUUUAUAUGCAGAU---AUACGUAUAUGAAGGUCAGAUGUGG ......(((((..(((((................)))))....)))))...(((...((((((((((((((....---....)))))))))...))))).))) ( -19.99) >DroSec_CAF1 51682 102 - 1 AAAACUAGUCUCUCAGACUUAAAUUUUUAAAACUGUCUGCAUAAGACUUUCCCAAAAAUCUUUUUAU-UGCAGAUAGUAUAUGUACAUGAAGGUCAGAUGUUA .......((((....(((((...........((((((((((.((((.(((....))).)))).....-))))))))))............))))))))).... ( -19.20) >DroSim_CAF1 53539 92 - 1 AAAAC----------GACUUAAAUUUAUAAAACUGUCUGCAUAAGACUUUCCCAAAAAUCUUUUUAU-UGCAGAUAGUAUAUGUACAUGAAGGUCAGAUGUUA .....----------(((((..((.((((..((((((((((.((((.(((....))).)))).....-))))))))))...)))).))..)))))........ ( -21.90) >consensus AAAACUAGUCUCUCAGACUUAAAUUUUUAAAACUGUCUGCAUAAGACUUUCCCAAAAAUCUUUUUAU_UGCAGAUAGUAUAUGUACAUGAAGGUCAGAUGUUA ...............(((((...........((((((((((.((((.(((....))).))))......))))))))))............)))))........ (-13.62 = -14.73 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:37 2006