Locus 2499

Sequence ID X_DroMel_CAF1
Location 6,639,765 – 6,639,873
Length 108
Max. P 0.995539
window4087

overview

Window 7

Location 6,639,765 – 6,639,873
Length 108
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 88.77
Mean single sequence MFE -30.84
Consensus MFE -24.60
Energy contribution -25.28
Covariance contribution 0.68
Combinations/Pair 1.11
Mean z-score -2.91
Structure conservation index 0.80
SVM decision value 2.59
SVM RNA-class probability 0.995539
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6639765 108 - 22224390
UUUUCAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAGUCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAU------GU----ACAUAAAU
........((((...(((((((.(((((.(((((....)))))..))))).)))))))(((..(((((((.....)))))))..)))..........)------))----)....... ( -32.10)
>DroSec_CAF1 33612 112 - 1
UUUGUAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAACCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAU------AUAUGUACAUAAAU
..((((.(((.......(((((.(((((.(((((....)))))..))))).)))))..(((..(((((((.....)))))))..)))...........------.))).))))..... ( -28.70)
>DroSim_CAF1 31380 108 - 1
UUUGCAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAGCCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAU------AU----ACAUAAAU
...((..........(((((((.(((((.(((((....)))))..))))).))))))).((..(((((((.....)))))))..))))..........------..----........ ( -33.20)
>DroEre_CAF1 27327 117 - 1
UUUGCAAAUACAACUGCGGUGUGUCACAAGUGAGAGC-UUUGUGGUGUGAAACACAGACGAUUUGAUCACCAAAAUUGGUCAUUUCGCGACACUGUAUAUGCAUAUAUGUACAUAUGU
...(((.(((((.(((.(.((..((((((((....))-.))))))..))...).))).(((..((((((.......))))))..)))......))))).)))((((((....)))))) ( -32.30)
>DroYak_CAF1 29627 112 - 1
UUUGCAAAUACAACUGCGGUGUGUCACAAAUGAGUGCCUUUGUGCUGUGAAACACAGCCGAUUUGAUCACCAAAAUUGGUCAUUUCGCUACACUUUAU------AUAUGUACAUAUGU
..((((........))))((((((.(((...(((((.......((((((...))))))(((..((((((.......))))))..)))...)))))...------...))))))))).. ( -27.90)
>consensus
UUUGCAAAUACAACUGCUGUGUGUCACAAACGAGAGCUUUUGUGGUGUGAAACACAGCCGAUUUGAUCACCAAAAGUGGUCAUUUCGCUACACUUUAU______AUAUGUACAUAAAU
...............(((((((.(((((.(((((....)))))..))))).)))))))(((..(((((((.....)))))))..)))............................... (-24.60 = -25.28 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:19 2006