Locus 2496

Sequence ID X_DroMel_CAF1
Location 6,631,468 – 6,631,571
Length 103
Max. P 0.769605
window4082

overview

Window 2

Location 6,631,468 – 6,631,571
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 97.41
Mean single sequence MFE -50.53
Consensus MFE -47.53
Energy contribution -47.53
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.94
SVM decision value 0.53
SVM RNA-class probability 0.769605
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6631468 103 + 22224390
CCCGCCAGCUGGAGGCGGGGUCCCUCGAUCAGGCUGUGGUGCUUGGAGUGCCACUGCUGCAGUUGACCGGCGGACGCAGUAUGCGGAUGGUGAUUGAGGUGAU
((((((.......))))))(((((((((((.(((.((((..(.....)..)))).))).......((((.....(((.....)))..)))))))))))).))) ( -48.40)
>DroEre_CAF1 19174 103 + 1
CCCGCCAGCUGGAGGCGGGGUCCCUCGAUCAGGCUGUGGUGCUUGGAGUGCCACUGCUGCAGCUGCCCGGCGGACGCGGUGUGCGGAUGGUGAUUGAGGUGAU
((((((.......))))))(((((((((((((((.((((..(.....)..)))).))).((.((((((.((....)).).).)))).)).))))))))).))) ( -51.60)
>DroYak_CAF1 21434 103 + 1
CCCGCCAGCUGGAGGCGGGGUCCCUCGAUCAGGCUGUGGUGCUUGGAGUGCCACUGCUGCAGCUGCCCGGCGGACGCGGUGUGCGGAUGGUGAUUGAGGUGAU
((((((.......))))))(((((((((((((((.((((..(.....)..)))).))).((.((((((.((....)).).).)))).)).))))))))).))) ( -51.60)
>consensus
CCCGCCAGCUGGAGGCGGGGUCCCUCGAUCAGGCUGUGGUGCUUGGAGUGCCACUGCUGCAGCUGCCCGGCGGACGCGGUGUGCGGAUGGUGAUUGAGGUGAU
((((((.......))))))(((((((((((((((.((((..(.....)..)))).)))............((..(((.....)))..)).))))))))).))) (-47.53 = -47.53 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:15 2006