Locus 2494

Sequence ID X_DroMel_CAF1
Location 6,625,277 – 6,625,369
Length 92
Max. P 0.950903
window4080

overview

Window 0

Location 6,625,277 – 6,625,369
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.06
Mean single sequence MFE -32.34
Consensus MFE -19.86
Energy contribution -20.06
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -2.61
Structure conservation index 0.61
SVM decision value 1.41
SVM RNA-class probability 0.950903
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6625277 92 - 22224390
GCUUUUAAGAGCGAGGUUGCGGCUUGAAGCGGUUUGAGAGA----------------------A------UUGUUUGAAGGUUCGAGAGAGGCAACCGCAGUAGUGAUGCCAAUUUGGCU
((((....))))(.((((((..(((.(((((((((....))----------------------)------)))))).))).(((....))))))))).).........(((.....))). ( -32.90)
>DroSec_CAF1 19210 92 - 1
GCUUUUAAGAGCGAGGUUGCGGCUUGAAGCGGUUUGAGAGA----------------------A------UUGUUUGAAGGUUCGAGAGAGGCAACCGCAACAGUGAUGCCAAUUUGGCU
((((....))))...((((((((((.(((((((((....))----------------------)------)))))).))).(((....)))....)))))))......(((.....))). ( -34.10)
>DroSim_CAF1 17040 92 - 1
GCUUUUAAGAGCGAGGUUGCGGCUUGAAGCGGUUUGAGAGA----------------------A------UUGUUUGAAGGUUCGAGAGAGGCAACCGCAUCAGUGAUGCCAAUUUGGCU
((((....))))..((((((..(((.(((((((((....))----------------------)------)))))).))).(((....)))))))))(((((...))))).......... ( -33.00)
>DroEre_CAF1 13322 114 - 1
GCUUUUAAGAGCGAGGUUGCGGCUUGAAGCGGUUUGAGAGAGCGUAAAAUGUGCUUAAGAUUUA------UUGUUUGAAGGUUCGAGAGAGGCAACGGUAGUAGUGAUGCCAAUUUGGCU
((((....))))...(((((..(((.(((((((......(((((.......))))).......)------)))))).))).(((....))))))))............(((.....))). ( -28.02)
>DroYak_CAF1 13593 120 - 1
GCUUUUUAGUGUGAGGUUGCGGCUUGAAGCGGUUUGAGAGAGCGCAAAAUGUGCUUCAGAUUGAGAUUGUUUGUUUGAAGGUUCGAGAGAGGCAACAGUAGCAGUGAUGCCAAUUUGGCU
.....(((.(((...(((((..(((((((((.(((....))))))........((((((((...........)))))))).))))))....)))))....))).))).(((.....))). ( -33.70)
>consensus
GCUUUUAAGAGCGAGGUUGCGGCUUGAAGCGGUUUGAGAGA______________________A______UUGUUUGAAGGUUCGAGAGAGGCAACCGCAGCAGUGAUGCCAAUUUGGCU
((((....))))(.((((((..(((.((((((......................................)))))).))).(((....))))))))).).........(((.....))). (-19.86 = -20.06 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:13 2006