Locus 2492

Sequence ID X_DroMel_CAF1
Location 6,624,335 – 6,624,430
Length 95
Max. P 0.838550
window4076

overview

Window 6

Location 6,624,335 – 6,624,430
Length 95
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 78.90
Mean single sequence MFE -24.86
Consensus MFE -10.50
Energy contribution -10.78
Covariance contribution 0.28
Combinations/Pair 1.05
Mean z-score -2.23
Structure conservation index 0.42
SVM decision value 0.74
SVM RNA-class probability 0.838550
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6624335 95 - 22224390
AUUGAUCGAAAGAUCGAGAG--UUGAUGUCCAGAUUGUAGGCUUAAGUGC-----------------AAUUGAAAACGGGCAGAAUUUUGCAUGUGAGAAGUGCACAGAUAUAA
.((((((....))))))(((--(..(((.......)))..))))..((((-----------------(.......(((.((((....)))).)))......)))))........ ( -23.32)
>DroSec_CAF1 18268 88 - 1
AUUGAUCGAAAGAUCGAGAGUGUUGAUGUGCAGAUUGAAGGCUUAAGUGC-----------------AAUUGAAAACGGGCAGCAUUCU---UGUGAGAAGUGCACAG------
...((((....))))((((((((((.(((...(((((...((....)).)-----------------))))....)))..)))))))))---)(((.......)))..------ ( -26.40)
>DroSim_CAF1 16093 88 - 1
AUUGAUCGAAAGAUCGAGAGUGUUGAUGUGCAGAUUGAAGGCUUAAGUGC-----------------AAUUGAAAACGGGCAGCAUUCU---UGUGAGAAGUGCACAG------
...((((....))))((((((((((.(((...(((((...((....)).)-----------------))))....)))..)))))))))---)(((.......)))..------ ( -26.40)
>DroEre_CAF1 12382 107 - 1
--UGAUCGAAAGAUCGAGAG--UUGAUGUCCAGAUUGAAGGCUUAAGUGCUGAUCGAACGCAACGGAAAUUGAAAACGGGGAGCCUUUU---UGUGAGAAGUACACAGAUAAAA
--.((((....))))....(--(((.(((...((((...(((......)))))))..))))))).............((....))..((---((((.......))))))..... ( -23.30)
>DroYak_CAF1 12646 107 - 1
--GGAUCGAAAGAUCGAGAG--UUGAUGUCCAGAUUGAAGGCUUAAGUGCUGAUCGACCGCAACGGAAAUUGAAAUCGGGGAGCAUUUU---UGUGAAAAGUGCACAGAUAUAA
--.((((....))))....(--(((..(((..((((...(((......))))))))))..))))..........(((...(.(((((((---.....))))))).).))).... ( -24.90)
>consensus
AUUGAUCGAAAGAUCGAGAG__UUGAUGUCCAGAUUGAAGGCUUAAGUGC_________________AAUUGAAAACGGGCAGCAUUUU___UGUGAGAAGUGCACAGAUA_AA
...((((....)))).........(((((((.........((......))...................(((....)))))).)))).....((((.......))))....... (-10.50 = -10.78 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:09 2006