Locus 2491

Sequence ID X_DroMel_CAF1
Location 6,619,755 – 6,619,870
Length 115
Max. P 0.539083
window4075

overview

Window 5

Location 6,619,755 – 6,619,870
Length 115
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 78.68
Mean single sequence MFE -30.48
Consensus MFE -21.86
Energy contribution -22.92
Covariance contribution 1.06
Combinations/Pair 1.09
Mean z-score -1.02
Structure conservation index 0.72
SVM decision value 0.01
SVM RNA-class probability 0.539083
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6619755 115 - 22224390
AAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAAUGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG-GUCGCUAAUGCCUAUAUGCUUGUCUUCAAAAAAA
((((.((((...((((((((((..(.....)..)))))))))).....(((((....)))))...))))...((((((((.-...))))..))))....))))............. ( -32.60)
>DroSec_CAF1 13876 107 - 1
AAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAACGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG-GUCACUAAAGCC-------UUGUCUUCAGA-AAA
......((......))...(((((((((.((..(((((((.....)))))))..)).))))...........((((((((.-...))))..)))-------)..)))))...-... ( -30.50)
>DroSim_CAF1 11739 107 - 1
AAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAACGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG-GUCACUAAAGCC-------UUGUCUUCAGA-AAA
......((......))...(((((((((.((..(((((((.....)))))))..)).))))...........((((((((.-...))))..)))-------)..)))))...-... ( -30.50)
>DroEre_CAF1 7722 94 - 1
CAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAAUGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG-AUC--------------------CUUGAGA-AAC
(((((((((...((((((((((..(.....)..)))))))))).....(((((....)))))...))))....)))))...-...--------------------.......-... ( -29.80)
>DroYak_CAF1 8137 109 - 1
AAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAACGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG-AAU---AAUGCCUA--ACCUCGUUUUUAGC-AAA
..((..((......))(((((((.((((.((..(((((((.....)))))))..)).))))...........((((.....-...---...)))).--.)))))))....))-... ( -34.70)
>DroPer_CAF1 28966 93 - 1
CAAUCGCCACAAUCGGAUGGAGGAGAACGGCAUUUCGCUGUGGAUCAAUGAGCAGCAGCUGAAGAUGCUGAGCGGUGAGCAGACC--------------------CCUGA---AAA
...(((((..............((..(((((.....)))))...))...(..(((((........)))))..)))))).(((...--------------------.))).---... ( -24.80)
>consensus
AAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAACGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG_AUC___AA_GCC_______UUGUCUUCAGA_AAA
..((((((....(((((((((((.(.....).)))))))))))......((((....)))).............)))))).................................... (-21.86 = -22.92 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:08 2006