| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,609,400 – 6,609,520 |
| Length | 120 |
| Max. P | 0.844722 |
| Location | 6,609,400 – 6,609,520 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.17 |
| Mean single sequence MFE | -37.34 |
| Consensus MFE | -26.97 |
| Energy contribution | -27.53 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6609400 120 + 22224390 CCAUAAUCGUCAGGAACACGGCGCGAAGGGGUAGAGGCAUCAGAUCAUCCGAAAAUGGCAUCAACCGUGCCACGUUUAAUGCAUCCUUGAAUGCAAAAAAACCAAAGUUGUGCCGUGUUA ..............((((((((((((...(((....((((((((((((..(((..((((((.....))))))..))).))).)))..)).))))......)))....)))))))))))). ( -38.70) >DroEre_CAF1 25647 120 + 1 CCGUAUUCAUCAGAAACACGGCGCGAAGGGGCAAAUCCUUCAGAUCAUCCGAAAGCGGCAUCAAUCGUGCCACGUUUAAGGCAACCAUCGAUGCAAAAAAAACAAAGUUAUGCCGUGUGA ...............(((((((((((((((.....))))))...((....))..)).(((((.((..((((........))))...)).))))).................))))))).. ( -35.10) >DroYak_CAF1 23873 120 + 1 CCAUAUUCGUGCGAAACACGGCGCGAAGGGGCAAAGCCUUCAGAACAUCCGAGAGCGGCAUCAAUCGUGCCACGUUUAAGGCAACCAAAGAUGCAAAGAAACCAAUGUUGUGCCGUGUGC .....(((....)))((((((((((((((.......)))))..(((((.........(((((.....((((........))))......)))))..........)))))))))))))).. ( -38.21) >consensus CCAUAUUCGUCAGAAACACGGCGCGAAGGGGCAAAGCCUUCAGAUCAUCCGAAAGCGGCAUCAAUCGUGCCACGUUUAAGGCAACCAUAGAUGCAAAAAAACCAAAGUUGUGCCGUGUGA ...............((((((((((((((.......)))))............((((((((.....))))).........(((........)))............)))))))))))).. (-26.97 = -27.53 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:04 2006