Locus 2487

Sequence ID X_DroMel_CAF1
Location 6,604,951 – 6,605,071
Length 120
Max. P 0.668447
window4070

overview

Window 0

Location 6,604,951 – 6,605,071
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.63
Mean single sequence MFE -31.15
Consensus MFE -21.49
Energy contribution -23.67
Covariance contribution 2.19
Combinations/Pair 1.13
Mean z-score -1.74
Structure conservation index 0.69
SVM decision value 0.29
SVM RNA-class probability 0.668447
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6604951 120 + 22224390
GACGCCACAGAUGUUGUUGUCAUUCCUUUGACGACGCCGUUUUGUGCUGCCUCCUUUAGAAACGUUAAUUAAGUUCCAAGAAAUGAAUGGAAAUGUGUUUUAUUUUAUACAUUGCGUAUU
((.((((((((((.((((((((......)))))))).)).))))))..)).))........((((.........((((.........))))(((((((........)))))))))))... ( -27.00)
>DroSec_CAF1 20017 119 + 1
GGCGCCACAGAUGUUGUUGUCAUUCCUUUGACGACGCCGUUCUGUGCUGCCUUCUUUAGAAACGUUAAUUAAGGUUU-AGAAAUGAAUAGAAAUCUGUUUCUGUUUAUACAUUGCGUAUU
((((.((((((((.((((((((......)))))))).)).)))))).))))((((....((((.((....)).))))-))))(((((((((((....)))))))))))............ ( -36.20)
>DroSim_CAF1 17275 119 + 1
GGCGCCACAGAUGUUGUUGUCAUUCCUUUGACGACGCCGUUCUGUGCUGCCUUCUUUAGAAACGUUAAUUAAGGUUU-AGAAAUGAAUAGAACUCUGUUUCUGUUUAUACAUUGCGUAUU
((((.((((((((.((((((((......)))))))).)).)))))).))))((((....((((.((....)).))))-))))((((((((((......))))))))))............ ( -35.10)
>DroEre_CAF1 21253 114 + 1
AGCGCCACAGAUGU---UGUCAUUGCUUUGGCGACGCCGUUGUGUGCUGCCUCCUUCAGAAACGUUAAUUAGGUUUG-AAGAAUGAAAGCAAACC-G-CUCUGUUUAUACAUUGUAUAUA
((((.(((((.(((---(((((......))))))))...)))))((((..(..(((((((..(........).))))-)))...)..))))...)-)-)).....(((((...))))).. ( -26.30)
>consensus
GGCGCCACAGAUGUUGUUGUCAUUCCUUUGACGACGCCGUUCUGUGCUGCCUCCUUUAGAAACGUUAAUUAAGGUUU_AGAAAUGAAUAGAAAUCUGUUUCUGUUUAUACAUUGCGUAUU
((((.((((((((.((((((((......)))))))).)).)))))).))))...............................((((((((((......))))))))))............ (-21.49 = -23.67 +   2.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:03 2006