Locus 2484

Sequence ID X_DroMel_CAF1
Location 6,600,501 – 6,600,621
Length 120
Max. P 0.505969
window4065

overview

Window 5

Location 6,600,501 – 6,600,621
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.83
Mean single sequence MFE -37.42
Consensus MFE -33.58
Energy contribution -34.38
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.90
SVM decision value -0.05
SVM RNA-class probability 0.505969
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6600501 120 + 22224390
GCUCAAUGCUCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCUUGCCCUCCAACGGACGUCCUGCCCAACUUCCGCAGCAUCUGCAGAUGUCCAGCAAUGGAUA
((((((.(((((((((..(((((((.........))))))).....)))).)))).).))).........(((((((.(((.........)))((....)).))))))))))........ ( -37.00)
>DroSec_CAF1 15852 120 + 1
GCUCAAUGCCCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCCUGCCCUCCAACGGACGUCCUGCCCAACUGCCGCAGCAUCUGCAGAUGUCCAGCAAUGGCUA
((.((.(((.((((((..(((((((.........))))))).....)))).)).................(((((((.(((.....(((....)))...)))))))))).))).)))).. ( -38.20)
>DroSim_CAF1 13233 120 + 1
GCUCAAUGCCCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCCUGCCCUCCAACGGACGUCCUGCCCAACUGCCGCAGCAUCUGCAGAUGUCCAGCAAUGGCUA
((.((.(((.((((((..(((((((.........))))))).....)))).)).................(((((((.(((.....(((....)))...)))))))))).))).)))).. ( -38.20)
>DroEre_CAF1 16086 120 + 1
GCUCAAUGCUCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCCUGCCCUCCAACGGUCGUCCUGCCCAACUGCCGCAGCAUCUGCAGAUGUCCAGCAAUGGCUA
((.....))..((((..(((..(((((((.......)))))))....((((((.((((.(........).))))...((((.....(((....)))...)))).))))))))).)))).. ( -37.60)
>DroYak_CAF1 15547 120 + 1
GCUCAAUGCUCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCCUGCCCUCCAACGGACGUCCUGCCCAACUGCCGCAGCAUCUGCAAAUGUCCAGCAAUGGCUA
((.((.((((((((((..(((((((.........))))))).....)))).)))................((((((..(((.....(((....)))...))).)))))).))).)))).. ( -36.10)
>consensus
GCUCAAUGCUCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCCUGCCCUCCAACGGACGUCCUGCCCAACUGCCGCAGCAUCUGCAGAUGUCCAGCAAUGGCUA
((.((.(((.((((((..(((((((.........))))))).....)))).)).................(((((((.(((.....(((....)))...)))))))))).))).)))).. (-33.58 = -34.38 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:59 2006