Locus 2482

Sequence ID X_DroMel_CAF1
Location 6,599,745 – 6,599,865
Length 120
Max. P 0.545730
window4063

overview

Window 3

Location 6,599,745 – 6,599,865
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.97
Mean single sequence MFE -48.55
Consensus MFE -43.71
Energy contribution -43.65
Covariance contribution -0.06
Combinations/Pair 1.11
Mean z-score -1.54
Structure conservation index 0.90
SVM decision value 0.02
SVM RNA-class probability 0.545730
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6599745 120 + 22224390
GGAGCGCAAGGCCAUCGGUGAGGGUGACCGCCAGACGUCUAGCGGCAAACCAGUGAGCCUGUGGCAAGUUAUCAAGAAUCCGGCAAUGAUCAUGUUGAUGAUUGCCGCGUCCAUCCGUCA
(((.(((...(((((.(((...(((..((((.((....)).))))...))).....))).)))))................((((((.(((.....))).))))))))))))........ ( -46.90)
>DroSec_CAF1 15096 120 + 1
GGAGCGCAAGGCCAUUGGUGAGGGUGACCGCCAGACGUCCAGCGGCAAACCGGUGAGCCUGUGGCAGGUUAUCAAGAAUCCGGCAAUGAUCAUGUUGAUGAUUGCCGCGUCCAUCCGUCA
(((.(((..((...(((((((((....))((((.(.(..((.(((....))).))..).).))))...)))))))....))((((((.(((.....))).))))))))))))........ ( -50.30)
>DroEre_CAF1 15330 120 + 1
GGAGCGCAAGGCCAUCGGCGAGGGUGACCGGCAGACGUCCAGCGGCAAACCGGUGAGCCUGUGGCAGGUUAUCAAGAGUCCGGCGAUGAUCAUGCUGAUGAUUGCCGCGUCCAUCCGUCA
(((.(((...(((((.(((..((....))(((....)))((.(((....))).)).))).)))))................((((((.(((.....))).))))))))))))........ ( -47.70)
>DroYak_CAF1 14787 120 + 1
GGAGCGCAAGGCCAUCGGUGAGGGUGACCGCCAGACGUCCAGCGGCAAACCGGUGAGCCUGUGGCAGGUUAUCAAGAGUCCGGCAAUGAUCAUGCUGAUGAUUGCCGCGUCCAUCCGUCA
(((((((.(((((((((((..((....))(((...........)))..))))))).))))...))................((((((.(((.....))).)))))))).)))........ ( -49.30)
>consensus
GGAGCGCAAGGCCAUCGGUGAGGGUGACCGCCAGACGUCCAGCGGCAAACCGGUGAGCCUGUGGCAGGUUAUCAAGAAUCCGGCAAUGAUCAUGCUGAUGAUUGCCGCGUCCAUCCGUCA
(((.(((.........(((...(((((((((((.(.(..((.(((....))).))..).).)))).)))))))....).))((((((.(((.....))).))))))))))))........ (-43.71 = -43.65 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:57 2006