Locus 2480

Sequence ID X_DroMel_CAF1
Location 6,595,691 – 6,595,793
Length 102
Max. P 0.908439
window4060

overview

Window 0

Location 6,595,691 – 6,595,793
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.51
Mean single sequence MFE -31.93
Consensus MFE -19.62
Energy contribution -20.75
Covariance contribution 1.12
Combinations/Pair 1.15
Mean z-score -2.28
Structure conservation index 0.61
SVM decision value 1.06
SVM RNA-class probability 0.908439
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6595691 102 + 22224390
UU--------CAGUUGGCGUCGC-------CAGCACUUAGCACCUGGCUCA---UAAUGACCAUAUGCAAAUCGAAAAUCACAUGGAUUCUCUUGGCACCCAGCGACUCCUAACUGACCA
.(--------(((((((.(((((-------..((.....(((..(((.((.---....)))))..))).....((.((((.....)))).))...)).....))))).)).))))))... ( -28.70)
>DroSec_CAF1 11180 102 + 1
UU--------CAGUUGGCGUCGC-------UAGCACUUAGCACCUGGCCCA---UAAUGGCCAUAGGCAAAUCGUGAAUCACAUGGAUUCUCUUGGCACCCAGCGACUGCUAACUGACCA
.(--------(((((((((((((-------(.((.....((...(((((..---....)))))...)).....(.(((((.....))))).)...))....)))))).)))))))))... ( -39.60)
>DroEre_CAF1 11309 110 + 1
UUCAUUUCCUCAGGUGGCGUCGGUAGCACUUGGCACUUAGCACCUGGCCCA---CAAUGGCCAUAUGCAAAU-------CACAUGGAUUCUCUUGGCACCCGGCGGCUGCUAACUGACCA
.........(((((..(((((((..((............(((..(((((..---....)))))..))).(((-------(.....))))......))..))))).))..)...))))... ( -32.20)
>DroYak_CAF1 10535 98 + 1
UU--------CAGGUGGCGUCGC-------UGGCACUUAGCACCUCGCUCAUUAUAAUGGCCAUAUGCAAAUC----AUCACAUGGAUUCUCUUGGCACCCAGCGG---CUAACUGACCA
.(--------(((.((((..(((-------(((.....(((.....)))..........((((...(..((((----........))))..).))))..)))))))---))).))))... ( -27.20)
>consensus
UU________CAGGUGGCGUCGC_______UAGCACUUAGCACCUGGCCCA___UAAUGGCCAUAUGCAAAUC____AUCACAUGGAUUCUCUUGGCACCCAGCGACUGCUAACUGACCA
..........(((((((((((((................(((..(((.(((......))))))..)))...............(((..((....))...)))))))).)))))))).... (-19.62 = -20.75 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:54 2006