Locus 2477

Sequence ID X_DroMel_CAF1
Location 6,593,697 – 6,593,810
Length 113
Max. P 0.678005
window4050

overview

Window 0

Location 6,593,697 – 6,593,810
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.18
Mean single sequence MFE -26.82
Consensus MFE -19.70
Energy contribution -20.22
Covariance contribution 0.52
Combinations/Pair 1.11
Mean z-score -1.44
Structure conservation index 0.73
SVM decision value 0.30
SVM RNA-class probability 0.678005
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6593697 113 - 22224390
ACACCAACUGAGUUGCGUCAAUAUUAUAUGUAGCUCAAACAG-------ACACAGACUCUUAGUGGUUUGCGCUGUAAACCGAAGUGCCAUUGGCUAUUUCAUCCGCCUUCACUCGGAAU
........((((((((((.........)))))))))).((((-------.(.((((((......)))))).)))))...((((.(((.....(((..........)))..)))))))... ( -30.70)
>DroSec_CAF1 9304 94 - 1
ACAGCAACUGAGUUGCGUCAAUAUUAUAUGUAGCUCAAACAG-------ACACAGACUCUUAAUGGUUUGCGCUGUAAACCGAAGUGCCAUUGGCUAUUUC-------------------
(((((...((((((((((.........)))))))))).....-------...((((((......)))))).))))).....((((((((...))).)))))------------------- ( -26.10)
>DroSim_CAF1 6107 94 - 1
ACAGCACCUGAGUUGCGUCAAUAUUAUAUGUAGCUCCAACAG-------ACACAGACUCUUAAUGGUUUGCGCUGUAAACCGAAGUGCCAUUGGCUAUUUC-------------------
(((((....(((((((((.........)))))))))......-------...((((((......)))))).))))).....((((((((...))).)))))------------------- ( -24.40)
>DroEre_CAF1 9462 117 - 1
ACAGCAACUGAGUUGCGUCAAUAUUA--UGUAGUUCAAACAGACUCCAGACACAGACUCCUAAUGGCUUGCGUUGUAAGCCAAAGUGCCAUUGGCCAUUUC-UCCCCUUCCCUUCGCCGU
...(((((...)))))((((((....--((.((((......)))).))(.(((((....))..((((((((...))))))))..))).)))))))......-.................. ( -23.70)
>DroYak_CAF1 8647 106 - 1
ACAGCAACCGAGUUGCGUCAAUAUUA--UGUGGCUCAAA-----------CACAGACUCUUAAUGGUUUGCGUUGUAGAGCGAAGUGCCAUUGGCUAUUUC-UCCGCUUCCCAUCGGCAU
...(((((...)))))(((.......--.(((((((.((-----------(.((((((......)))))).)))...))))((((((((...))).)))))-..)))........))).. ( -29.19)
>consensus
ACAGCAACUGAGUUGCGUCAAUAUUAUAUGUAGCUCAAACAG_______ACACAGACUCUUAAUGGUUUGCGCUGUAAACCGAAGUGCCAUUGGCUAUUUC_UCC_C_U_C__UCG___U
(((((....(((((((((.........)))))))))................((((((......)))))).))))).....((((((((...))).)))))................... (-19.70 = -20.22 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:45 2006