| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,593,492 – 6,593,594 |
| Length | 102 |
| Max. P | 0.854500 |
| Location | 6,593,492 – 6,593,594 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.36 |
| Mean single sequence MFE | -23.57 |
| Consensus MFE | -14.61 |
| Energy contribution | -15.83 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.854500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6593492 102 - 22224390 UUGC----------ACAUAUUUGGCAGAUCAUC-CAUCACAUCAUC---AAUGCAAUCCCAAUCGAAGUGGUAGUUUUUAUUGCCAGCGAUCUUUAAUGAUCCGUGUUUAAUCACU .(((----------.((....)))))((((((.-.....(((....---.)))........((((...(((((((....))))))).)))).....)))))).(((......))). ( -18.70) >DroSec_CAF1 9102 101 - 1 UUGCAUAUAUGCACACAUAUCUGGCAGAUCAUCCCAUCGCAUCAUC--------------CAUCGCAGUGGUAGUUUUUACUGCCAGCGAUCUUUAAUGAUGCGUGU-UAAUCACU .(((..(((((....)))))...)))(((.....((.((((((((.--------------.(((((..(((((((....)))))))))))).....)))))))))).-..)))... ( -31.00) >DroSim_CAF1 5891 115 - 1 UUGCAUAUAUGCACACAUAUUUGGCAGAUCAUCCCAUUACAUCAUCAUCAAUGCAAUCCCAAUCGAAGUGGUAGUUUUUACUACCAGCGAUCUUUAACGAUUCGUGU-UAAUCACU ((((((...(((.((......)))))(((.((........)).)))....)))))).....((((...(((((((....))))))).))))..((((((.....)))-)))..... ( -21.00) >consensus UUGCAUAUAUGCACACAUAUUUGGCAGAUCAUCCCAUCACAUCAUC___AAUGCAAUCCCAAUCGAAGUGGUAGUUUUUACUGCCAGCGAUCUUUAAUGAUCCGUGU_UAAUCACU ((((..(((((....)))))...))))..................................((((...(((((((....))))))).))))............(((......))). (-14.61 = -15.83 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:45 2006