| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,586,507 – 6,586,610 |
| Length | 103 |
| Max. P | 0.738330 |
| Location | 6,586,507 – 6,586,610 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.70 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -20.38 |
| Energy contribution | -20.50 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6586507 103 + 22224390 AUCGAUAAGUUAUCGCAAUGGUUCGCGCACGUACUAACCAAUGUGUAUUGUGUCUCCGCUAAC--------------UAAGGAUGGUGUAUUGGCUUAAUGCCAAUGCACACUGGA-A ...((((...((.((((.(((((.((....))...))))).))))))...))))(((......--------------...)))..((((((((((.....))))))))))......-. ( -30.40) >DroSim_CAF1 301 104 + 1 AUCAAUAAGUUCUCGGAAUGGUUCGCGCACGUGCUAACGCUUGCGUAUGGUGUCUCCGCUAAC--------------UAAGGAUGGUGUAUUGGCUUAAUGCCAAUGCACACUGGAAA (((....((((..(((((((.(..(((((...((....)).)))))..).))).))))..)))--------------)...))).((((((((((.....))))))))))........ ( -35.40) >DroYak_CAF1 1145 115 + 1 AUCGAUAAGUUAUCGCAAUGGUUCGCGCACGAGCUGG--AUAGUGUAAGAUGUCCCCGCUAACUUCGAAGUACUAGCUAAGGUUCGUGUAUUGGCUGAAUGUUAAUGCACGCUGAA-A .((((..(((((..((...((((((....))))))((--(((........)))))..)))))))))))................(((((((((((.....))))))))))).....-. ( -31.40) >consensus AUCGAUAAGUUAUCGCAAUGGUUCGCGCACGUGCUAAC_AUUGUGUAUGGUGUCUCCGCUAAC______________UAAGGAUGGUGUAUUGGCUUAAUGCCAAUGCACACUGGA_A .......(((........((((....((((((((..........)))).))))....))))........................((((((((((.....)))))))))))))..... (-20.38 = -20.50 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:32 2006