Locus 247

Sequence ID X_DroMel_CAF1
Location 837,877 – 837,991
Length 114
Max. P 0.500000
window373

overview

Window 3

Location 837,877 – 837,991
Length 114
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -37.83
Consensus MFE -25.46
Energy contribution -26.65
Covariance contribution 1.19
Combinations/Pair 1.07
Mean z-score -1.51
Structure conservation index 0.67
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 837877 114 - 22224390
AAAGGGGAUUGAGUCCUUUUUGGGGCAAUACCUAGUGAGCAAGGGAGUAAUGCGUAAUGAAAGUGCAAUUGCUGCCGAAGCUGCAGCGGCUGGUGGCAACAGUUCGCAGCGCAA
(((((((((...)))))))))(((......))).....((..((.(((((((((.........))).)))))).))...(((((...(((((.......))))).))))))).. ( -35.70)
>DroSec_CAF1 38726 114 - 1
AAAGGGGAUUGAGUCCUUUUUGGGGCAACACCUAGUGAGCAGGGGAGUUAUGCGUAAUGAAAGUGCAGUCGCUGCCGGAGCUGCAGCGACUGGCGGCAACAGUUCGCAGCGCAA
.........(((.(((((((((((......))))).....)))))).)))(((((..((((.((.((((((((((.......))))))))))))(....)..))))..))))). ( -40.50)
>DroSim_CAF1 34973 114 - 1
AAAGGGGAUUGAGUCCUUUUUGGGGCAACACCUAGUGAGCAGGGGAGUUAUGCGUAAUGAAAGUGCAGUCGCUGCCGGAGCUGCAGCGGCUGGCGGCAACAGUUCGCAGCGCAA
.........(((.(((((((((((......))))).....)))))).)))(((((..((((.((.((((((((((.......))))))))))))(....)..))))..))))). ( -39.90)
>DroEre_CAF1 38234 95 - 1
AAAGGGUAUUGAGUCCU---UGGGGGAGCACCUAGUGAGCAGGGUAGUAAUGCGUAAUGAAAGUGCAGCUGCAGCU----------------GCAGCUGCAGUUCCCAGCGCAA
.(((((.......))))---)..((((((.(((.(....))))(((....)))..........(((((((((....----------------)))))))))))))))....... ( -35.20)
>consensus
AAAGGGGAUUGAGUCCUUUUUGGGGCAACACCUAGUGAGCAGGGGAGUAAUGCGUAAUGAAAGUGCAGUCGCUGCCGGAGCUGCAGCGGCUGGCGGCAACAGUUCGCAGCGCAA
...(((......(((((....)))))....))).((((((..........((((.........))))((.((((((((.((....))..)))))))).)).))))))....... (-25.46 = -26.65 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:54 2006