Locus 2469

Sequence ID X_DroMel_CAF1
Location 6,583,396 – 6,583,516
Length 120
Max. P 0.978890
window4032

overview

Window 2

Location 6,583,396 – 6,583,516
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.25
Mean single sequence MFE -32.05
Consensus MFE -27.60
Energy contribution -27.12
Covariance contribution -0.48
Combinations/Pair 1.18
Mean z-score -1.93
Structure conservation index 0.86
SVM decision value 1.82
SVM RNA-class probability 0.978890
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6583396 120 + 22224390
GGAUCGUUGAUUUUCAUGUGGCCCCCAGAAAGCGAAAGUCUGUCGUGCGAAAGAGUGCGCAAUAGAUUGGGCAGAACGAGACGGAAGGCAAGGAAAAUUUGUUUUGCCAAAAAUGAAAAU
.........((((((((.((((.(((((...((....))((((.(((((......))))).)))).))))).............((((((((.....))))))))))))...)))))))) ( -32.60)
>DroSec_CAF1 27687 113 + 1
GG-------AUUUUCAUGUGGCCCCCAGAAAGCGAAAGUCUGUCGUGCGAAAGAGUGCGCAAUAGACUGGGCAGAACGAGACGGAAGGCAAGGAAAAUUUGUUUUGCCAAAAAUGAAAAU
..-------((((((((.((((.(((((...((....))((((.(((((......))))).)))).))))).............((((((((.....))))))))))))...)))))))) ( -35.10)
>DroSim_CAF1 39793 120 + 1
GGAUCGUGGAUUUUCAUGUGGCCCCCAGAAAGCGAAAGUCUGUCGUGCGAAAGAGUGCGCAAUACACGGGGCAGAACGAGACGGAAGGCAAGGAAAAUUUGUUUUGCCAAAAAUGAAAAU
.........((((((((((.(((((..((.(((....).)).))(((((......))))).......)))))...)).........(((((((........)))))))....)))))))) ( -34.60)
>DroEre_CAF1 27087 113 + 1
GG-------AUUUUCAUGUGGCCCCCAGAAAGCGAAAGUCUGUUGUGCGAAAGAGUGCGCAAUACAAUAGGCAGAACGAGACGGAAUGCAAGGAAAAUUUGUUUUGCCAAAAUUGAAAAU
..-------(((((((((((.....(((...((....)))))(((((((......)))))))))))...(((((((((((.................))))))))))).....))))))) ( -27.93)
>DroYak_CAF1 38448 113 + 1
GG-------AUUUUCUUGUGGCCCCCAAAAAGCGAAAGUCUGUCGUGCGAACGAGUGCGCAAUAGAAUGGAUAGAACGAGACGGAGCGCAAGGAAAAUUUGUUUUGCCAAGAGGGAAAAU
..-------((((((((.((((..(((.....(....)(((((.(((((......))))).))))).))).......((((((((.(....).....))))))))))))...)))))))) ( -30.00)
>consensus
GG_______AUUUUCAUGUGGCCCCCAGAAAGCGAAAGUCUGUCGUGCGAAAGAGUGCGCAAUAGAAUGGGCAGAACGAGACGGAAGGCAAGGAAAAUUUGUUUUGCCAAAAAUGAAAAU
.........((((((((.((((..((......(....)(((((((((((......))))).........)))))).......))((((((((.....))))))))))))...)))))))) (-27.60 = -27.12 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:30 2006