Locus 2468

Sequence ID X_DroMel_CAF1
Location 6,582,657 – 6,582,777
Length 120
Max. P 0.523219
window4031

overview

Window 1

Location 6,582,657 – 6,582,777
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.88
Mean single sequence MFE -23.31
Consensus MFE -21.32
Energy contribution -21.52
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.12
Structure conservation index 0.91
SVM decision value -0.02
SVM RNA-class probability 0.523219
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6582657 120 - 22224390
CAGCGGCGCAUUUCUUAUGACAGAUCGCUAUAACACAAAAUAAAAUGCAAUCGCAGGGAAAUUACAAUUUAAUCAAAAUAUUUGCUCACAGAUAAGACAAGAGAAACGUGUCGGCAUUUU
...((((((.((((((.((...(((.((..................)).)))..........................((((((....))))))...)).)))))).))))))....... ( -20.77)
>DroSec_CAF1 26961 118 - 1
-AGCGGCGCAUUUCUUAUGACAGAUCGCUGUAACAGA-AAUAAAAUGCAAUCGCAGGGAAAUUAAAAUUUAAUCAAAAUAUUUGCUUACAGAUAAGACAAGAGAAACGUGUCGCCAUUUU
-.(((((((.((((((.((........((((((((((-.......(((....)))...........((((.....)))).)))).))))))......)).)))))).)))))))...... ( -26.14)
>DroSim_CAF1 39060 118 - 1
-AGCGGCGCAUUUCUUAUGACAGAUCGCUGUAACAGA-AAUAAAAUGCAAUCGCAGGGAAAUUAAAAUUUAAUCAAAAUAUUUGCUCACAGAUAAGACAAGAGAAACGUGUCGGCAUUUU
-..((((((.((((((.((.....((.((((......-..............)))).))...................((((((....))))))...)).)))))).))))))....... ( -22.65)
>DroEre_CAF1 26360 118 - 1
-AGCGGCGCAUUUCUUAUGACAGAUCGCUGUAACAGA-AAUAAAAUGCAAGCGCAAGGAAAUUACAAUUUAAUCAAAAUAUUUGCUCUCAGAUAAGACAAGAGAAACGUGUCGGCAUUUU
-..((((((.((((((.((.(..(((((((((.....-.......))).)))(((((.......................))))).....)))..).)).)))))).))))))....... ( -22.60)
>DroYak_CAF1 37735 118 - 1
-AGCGGCGCAUUUCUUAUGACAGAUCGCUGUAACAGA-AAUAAAAUGCAACCGCAGGCAAAUUACAAUUUAAUCAAAAUAUUUGCUCACAGAUAAGACAAGAGAAACGUGUCGGCAUUUU
-..((((((.((((((.((........((((......-.......(((....)))(((((((.................))))))).))))......)).)))))).))))))....... ( -24.37)
>consensus
_AGCGGCGCAUUUCUUAUGACAGAUCGCUGUAACAGA_AAUAAAAUGCAAUCGCAGGGAAAUUACAAUUUAAUCAAAAUAUUUGCUCACAGAUAAGACAAGAGAAACGUGUCGGCAUUUU
..(((((((.((((((.((((((....))))..............(((....))).......................((((((....))))))...)).)))))).)))))).)..... (-21.32 = -21.52 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:29 2006