| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,582,011 – 6,582,164 |
| Length | 153 |
| Max. P | 0.763047 |
| Location | 6,582,011 – 6,582,124 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 94.39 |
| Mean single sequence MFE | -29.55 |
| Consensus MFE | -27.69 |
| Energy contribution | -27.62 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6582011 113 - 22224390 CGGCGAAUGCGACUGCUUUAAUUGUGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGUACUUAAAAGGGGUGUAUUCGUAUUGAAAUCGCAUGG ..((((((((.(((.(((((((((((((......)))))))))((....(..((((((......))))))..)..)).....)))).)))))))))))............... ( -30.50) >DroSec_CAF1 26351 112 - 1 CUGCGAAUGCAACUGCUUUAAUUGUGCAAUUAGCUGCAUAAUUGCAAUGCUAUGAAUGAUCACGUAUUCAAGGAGGUACUUAAAAGGGGUGUAUUUGAACUGAAAUUG-AUGG ...((((((((.((.((((....((((...((((((((....))))..))))((((((......)))))).....))))...)))).))))))))))...........-.... ( -27.00) >DroSim_CAF1 38417 112 - 1 CUGCGAAUGCAACUGCUUUAAUUGUGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGUACUUAAAAGGGGUGUAUUUGUACUGAAAUUG-AUGG .((((((((((.((.(((((((((((((......)))))))))((....(..((((((......))))))..)..)).....)))).)))))))))))).........-.... ( -28.90) >DroYak_CAF1 37076 111 - 1 CUGCGAAUGCAACUGCUUUAAUUGUGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGCACUU--AAGGGGUGUAUUUGUACUGCAAUCGCAUGG .(((((.((((........(((((((((......)))))))))((((..(((((((((......)))))..))))(((((.--....)))))..))))..)))).)))))... ( -31.80) >consensus CUGCGAAUGCAACUGCUUUAAUUGUGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGUACUUAAAAGGGGUGUAUUUGUACUGAAAUCG_AUGG ..(((((((((.((.(((((((((((((......)))))))))((....(..((((((......))))))..)..)).....)))).)))))))))))............... (-27.69 = -27.62 + -0.06)
| Location | 6,582,047 – 6,582,164 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.51 |
| Mean single sequence MFE | -33.50 |
| Consensus MFE | -26.94 |
| Energy contribution | -26.94 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.763047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6582047 117 - 22224390 UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUUUCUACGGGCGGCGAAUGCGACUGCUUUAAUUG---UGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGU (((..((((.(.(((.((((((....))))))..))).).))))(((((((..(((...(((((---((((......)))))))))))).((.((.....)).)))))))))..)))... ( -31.60) >DroSec_CAF1 26386 117 - 1 UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUCUCUGCGGGCUGCGAAUGCAACUGCUUUAAUUG---UGCAAUUAGCUGCAUAAUUGCAAUGCUAUGAAUGAUCACGUAUUCAAGGAGGU (((......(((((((((((((.......))))))))..)))))((((((....((..((((((---((((......))))))))))....))..(((....))).))))))..)))... ( -35.50) >DroSim_CAF1 38452 117 - 1 UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUCUCUGCGCGCUGCGAAUGCAACUGCUUUAAUUG---UGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGU (((..((.(((.((((((((((.......)))))))))))))))((((((...(((...(((((---((((......)))))))))))).((.((.....)).)).))))))..)))... ( -37.90) >DroEre_CAF1 25763 102 - 1 UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUUUCUGCUGGCUGCGAAUGCAACUGCUUUAAUUGUUGUUUAAUUAGCUGCAUAAUUGCAA------------UCACGUAUUCAA------ ...((((..((((...((((((....)))))).))))..)).))((((((....(((..(((((.....))))))))((((....)))).------------....))))))..------ ( -28.60) >DroYak_CAF1 37110 117 - 1 UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUUUCUGCGGGCUGCGAAUGCAACUGCUUUAAUUG---UGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGC .....(((.(((((((((..((.......))..))))..)))))((((((...(((...(((((---((((......)))))))))))).((.((.....)).)).)))))).....))) ( -33.90) >consensus UCUGUGCUGGCAGUGCAGGGAAUUAAUUCUUUUCUGCGGGCUGCGAAUGCAACUGCUUUAAUUG___UGCAAUUAGCUGCAUAAUUGCAAUGCUCUGAAUGAUCACGUAUUCAAGGAGGU .........(((((((((((((.......))))))))..)))))((((((....(((..(((((.....))))))))((((....)))).................))))))........ (-26.94 = -26.94 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:28 2006