Locus 2463

Sequence ID X_DroMel_CAF1
Location 6,577,577 – 6,577,697
Length 120
Max. P 0.965482
window4023

overview

Window 3

Location 6,577,577 – 6,577,697
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 77.04
Mean single sequence MFE -22.77
Consensus MFE -16.10
Energy contribution -18.23
Covariance contribution 2.12
Combinations/Pair 1.14
Mean z-score -2.05
Structure conservation index 0.71
SVM decision value 1.58
SVM RNA-class probability 0.965482
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6577577 120 - 22224390
UAAUGUUGCAAAUUCAAUGUUGCAUAUUCAAUGUUGCAUAUUCAAUGUUGCAUAUUCAAUGUUGCAUAUUUAAUGUUGCAAAUUCAAUGUUGCAUAUUCAAUGUUGCAUAUUCAAUGUUG
..............((((((((.((((.((((((((.((((.((((((((.((...((((((((......))))))))...)).)))))))).)))).)))))))).)))).)))))))) ( -27.70)
>DroSim_CAF1 33940 105 - 1
---------------AAUGUUGCAUAUUCAAUGUUGCAUAUUCAAUGUUGCAAGUUCAAUGUUGCAAGUUCAAUGUUGCACAUUCAAUGUUGCAUAUUAAAUGUUGAUUAUUCAAUGUUG
---------------(((((((.(((.((((((((..((((.((((((((...((.((((((((......)))))))).))...)))))))).))))..)))))))).))).))))))). ( -26.40)
>DroEre_CAF1 21871 104 - 1
---------C-------UAAUGCUAAUUCGAUGUUGCACAUUCAAUGUUGCACAUUCAAUGUUGCAAAUUUAAUAUUUUAAAUUCAAUGUUGCAAAUUCAAUGUUACAAGUUCAAUGUUG
---------.-------...........((((((((.((....(((((((......((((((((..(((((((....)))))))))))))))......)))))))....)).)))))))) ( -16.80)
>DroYak_CAF1 32060 97 - 1
-----------------------ACUUUCAAUGUUGCAAAUUCAAUGUUGCACAUUCAAUGUUGCAUAUUCAAUGUUGCCAAUUCAAUGUUGCAUGUUCAAUGUUGCAAAUUCAAUGUUG
-----------------------.....((((((((.((.((((((((((.((((.((((((((.((...((....))...)).)))))))).)))).)))))))).)).)))))))))) ( -20.20)
>consensus
_________________UGUUGCAUAUUCAAUGUUGCAUAUUCAAUGUUGCACAUUCAAUGUUGCAAAUUCAAUGUUGCAAAUUCAAUGUUGCAUAUUCAAUGUUGCAAAUUCAAUGUUG
............................((((((((.((((.((((((((.((((.((((((((...((((........)))).)))))))).)))).)))))))).)))).)))))))) (-16.10 = -18.23 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:21 2006