Locus 2462

Sequence ID X_DroMel_CAF1
Location 6,575,854 – 6,575,970
Length 116
Max. P 0.596520
window4022

overview

Window 2

Location 6,575,854 – 6,575,970
Length 116
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 90.91
Mean single sequence MFE -45.20
Consensus MFE -33.42
Energy contribution -33.80
Covariance contribution 0.38
Combinations/Pair 1.07
Mean z-score -1.78
Structure conservation index 0.74
SVM decision value 0.13
SVM RNA-class probability 0.596520
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6575854 116 - 22224390
AACCGAGCCGAGUGCC-CCGAGAGUGGCAGGCGCACACACAGAUUGUGCGAUCGCGAAUGAGCGAAGAAGAGUCAGCAUCCCGAGAACGAUGCCGGAAAGGGGGCGUCUGGGUUU-CG
...((((((.((((((-((.....((((...((((((.......)))))).((((......))))......))))(((((........))))).......)))))).)).)).))-)) ( -43.90)
>DroSec_CAF1 20597 117 - 1
AACCGAGCCGAGUGCCGCCGAGAGUGGCAGGCGCACACACAGAUUGUGCGAUCGCGAAUGAGCGAAGAAGAGUCAGCAUCCCGAUAACGAAGCCGAAAAGGGGGCGGCUGGGUUU-CG
((((.((((...((((((.....))))))((((((((.......)))))..((((......))))......))).((.((((.....((....))....)))))))))).)))).-.. ( -44.50)
>DroSim_CAF1 32405 117 - 1
AACCGAGCCGAGUGCCCCCGAGAGUGGCAGGCGCGCACACAGAUUGUGCGAUCGCGAAUGAGCGAAGAAGAGUCAGCAUCCCGAGAACGAAGCCGAAAAGGGGGCGGCUGGGUUU-CG
((((.((((....((((((.....((((.(((.((((((.....)))))).((((......))))......))).......((....))..))))....)))))))))).)))).-.. ( -49.00)
>DroEre_CAF1 20276 113 - 1
AAGCGAGCCGAGUGCC-CCGAGAGUGGCAGGC--ACACGGAGAUUGUGCGAUCGCGAAAGAGCGACGAAGAGGCAGCAUCCCGAGAACGAAUCCGUAAAAGGGGCGGCUGGGUUCG--
...((((((.((((((-((....(((.....)--))(((((..((((.((.((((......))))))....((.......))....)))).)))))....))))).))).))))))-- ( -43.40)
>consensus
AACCGAGCCGAGUGCC_CCGAGAGUGGCAGGCGCACACACAGAUUGUGCGAUCGCGAAUGAGCGAAGAAGAGUCAGCAUCCCGAGAACGAAGCCGAAAAGGGGGCGGCUGGGUUU_CG
....(((((.((((((.((.....((((...((((((.......)))))).((((......))))..........................)))).....)))))).)).)))))... (-33.42 = -33.80 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:20 2006