Locus 246

Sequence ID X_DroMel_CAF1
Location 837,502 – 837,613
Length 111
Max. P 0.572541
window372

overview

Window 2

Location 837,502 – 837,613
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.68
Mean single sequence MFE -31.90
Consensus MFE -18.19
Energy contribution -18.15
Covariance contribution -0.04
Combinations/Pair 1.28
Mean z-score -1.77
Structure conservation index 0.57
SVM decision value 0.08
SVM RNA-class probability 0.572541
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 837502 111 - 22224390
UGUCAAGCUGCAGCC---------AUACUUGGAGGUGCAGAAAUAAUCGAGUUCGCGAAUGACCAGCGAAAAGGGAAGCUCGCGAGUGGAGGAGGAUGUCGCGCUCGACAACAAUAAAUG
((((...(((((.((---------(....)))...)))))........((((((((((.(..((........))..)..))))))((((.........)))))))))))).......... ( -31.00)
>DroSec_CAF1 38374 101 - 1
-------CUGCAGCC---------AUAACUGGAGGUGCAGAAAUAUUCGAGUUCGUGAAUGACCAGCGAAAAGGGAAACUUGCGAGUGGA---GGAUGUCGCGCUCGACAACAAUAAAUG
-------(((((.((---------(....)))...)))))......(((((..(((((....(((.((...(((....))).))..))).---.....))))))))))............ ( -28.40)
>DroSim_CAF1 34621 101 - 1
-------CUGCAGCC---------AUAACUGGAGGUGCAGAAAUAAUCGAGUUCGUGAAUGACCAGCGAAAAGGGAAGCUCGCGAGUGGA---GGAUGUCGCGCUCGACAACAAUAAAUG
-------(((((.((---------(....)))...)))))......((((((((((((.(..((........))..)..))))))((((.---.....))))))))))............ ( -27.80)
>DroEre_CAF1 37956 88 - 1
----------------------------CUGGAGGUGCAGGUGUAGUCGAGU-UGCGAAUGACCAGCGAGUCGGGAAACUCGUGAGUGGA---GGAUGUCGCACUCGACAACAAUAACAG
----------------------------(((......))).(((.(((((((-.((((....(((((((((......))))))...))).---.....))))))))))).)))....... ( -29.90)
>DroYak_CAF1 35212 117 - 1
UGUCGAGCUGCAGCCAUAACUGCCAUAACUGGAGGUGCAGAAAUAAUCGAGUUUGCGAGUGACCAGCGAAAUGGGAAACUCGUGAGCGGA---GGAUGUCGCGCUCGACAACAAUAACAG
((((((((.((.((....(((.(((....))).))))).((.((..((..(((..(((((..(((......)))...)))))..))).))---..)).)))))))))))).......... ( -42.40)
>consensus
_______CUGCAGCC_________AUAACUGGAGGUGCAGAAAUAAUCGAGUUCGCGAAUGACCAGCGAAAAGGGAAACUCGCGAGUGGA___GGAUGUCGCGCUCGACAACAAUAAAUG
.......(((((.(...................).)))))......((((((((((((.(..((........))...).))))))((((.........))))))))))............ (-18.19 = -18.15 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:52 2006