Locus 2459

Sequence ID X_DroMel_CAF1
Location 6,573,114 – 6,573,233
Length 119
Max. P 0.895786
window4016

overview

Window 6

Location 6,573,114 – 6,573,233
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.22
Mean single sequence MFE -30.50
Consensus MFE -25.38
Energy contribution -26.34
Covariance contribution 0.96
Combinations/Pair 1.11
Mean z-score -1.71
Structure conservation index 0.83
SVM decision value 0.99
SVM RNA-class probability 0.895786
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6573114 119 + 22224390
CAUAACGAUAACUGAACUUAAACGUAACUGGCCGAUCGGGUGACAAACCCGACGAGAA-UUCGAAAAUUCAAUUUCGAAUCCCUUUUUGCGAACAAUUAACGGCAGCAGGCAUCGGCUUA
.....((((..(((.((......)).....((((.((((((.....))))))((((((-(((((((......))))))))....)))))...........))))..)))..))))..... ( -31.50)
>DroSec_CAF1 17930 119 + 1
CAUAACGAUAACUGAACUUAAACGUAACUGGCCGAUCGGGUGACAAACCCGAUGAGAA-UUCGAAAACUCAAUUUCGAAUCCCUUUUUGCGAACAAUUAACGGCAGCAGGCAUCGGCUUA
.....((((..(((.((......)).....(((((((((((.....)))))))(((.(-(((((((......))))))))..)))...............))))..)))..))))..... ( -32.70)
>DroSim_CAF1 28522 119 + 1
CAUAACGAUAACUGAACUUAAGCGUAACUGGCCGAUCGGGUGACAAACCCGAUGAGAA-UUCGAAAACUCAAUUUCGAGUCCCUUUUUGCGAACAAUUAACGGCAGCAGGCAUCGGCUUA
.....((((..(((.((......)).....(((((((((((.....)))))))(((.(-(((((((......))))))))..)))...............))))..)))..))))..... ( -32.70)
>DroEre_CAF1 17583 119 + 1
CAUAACGAUAACUGAACUUAAACGUAACUGGCCGAUCGGGUGACAAAUCCGAUGAUAA-UUCGAAAAUUCAACUUCGAAUCCCUUUUUGCGAACAAUUAACGGCAGCAGGCAUCGGCUUA
.....((((..(((.((......)).....(((((((((((.....)))))))....(-((((((........)))))))....................))))..)))..))))..... ( -28.40)
>DroYak_CAF1 27489 120 + 1
CAUAACGUUAUCCGAACUUAAACGUAACUGGCCGAUCGGGUGACAAUGCCGAUGAUUAUUUUGAAAAUUCAACUUCGAAUCCCUUUUUGUGAACAAUUAACGGCAGCAGGCAUCGGCUUA
......(((((((((.(................).)))))))))...(((((((.....((((((........)))))).((.((.(((....)))..)).)).......)))))))... ( -27.19)
>consensus
CAUAACGAUAACUGAACUUAAACGUAACUGGCCGAUCGGGUGACAAACCCGAUGAGAA_UUCGAAAAUUCAAUUUCGAAUCCCUUUUUGCGAACAAUUAACGGCAGCAGGCAUCGGCUUA
.....((((..(((.((......)).....(((((((((((.....)))))))......(((((((......))))))).....................))))..)))..))))..... (-25.38 = -26.34 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:15 2006