Locus 2453

Sequence ID X_DroMel_CAF1
Location 6,567,328 – 6,567,448
Length 120
Max. P 0.837850
window3995

overview

Window 5

Location 6,567,328 – 6,567,448
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.75
Mean single sequence MFE -32.92
Consensus MFE -31.16
Energy contribution -30.72
Covariance contribution -0.44
Combinations/Pair 1.09
Mean z-score -1.23
Structure conservation index 0.95
SVM decision value 0.74
SVM RNA-class probability 0.837850
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6567328 120 - 22224390
ACUGCGUUUCACUAUCGUUUCGAUUACGAUCAACUUUACAUUCCACAUUGGCUACUAUGGCCUGUUGAUGUGGUUCCCGGAGCUCUUCAAUCGCUUCGAGGAGUACGAGAAGGCAUUCCC
..(((.((((...(((((.......)))))......(((...(((((((((((.....))))....))))))).(((((((((.........)))))).)))))).))))..)))..... ( -33.40)
>DroSec_CAF1 12290 120 - 1
ACUGCGUUUCACCAUCGUUUCGAUUACGAUCAACUUUACAUUCCACAUUGGAUACUACGGCCUGUUGAUGUGGUUCCCGGAGCUCUUCAAUCGUUUCGAGGAAUACGAGAAGGCAUUCCC
..(((.((((...(((((.......)))))............((((((..(...(....)....)..))))))((((((((((.........)))))).))))...))))..)))..... ( -28.80)
>DroSim_CAF1 22816 120 - 1
ACUGCGUUUCACCAUCGUUUCGAUUACGAUCAACUUUACAUUCCACAUUGGCUACUACGGCCUGUUGAUGUGGUUCCCGGAGCUCUUCAAUCGUUUCGAGGAAUACGAGAAGGCAUUCCC
..(((.((((...(((((.......)))))............((((((..((..(....)...))..))))))((((((((((.........)))))).))))...))))..)))..... ( -32.00)
>DroEre_CAF1 11916 120 - 1
AUUGCGCUUCACCAUCGUCUCGAUCACGAUUAACUUUACAUUCCACAUUGGCUACUACGGCCUGUUGAUGUGGUUCCCGGAGCUCUUCAAUCGCUUCGAGGAGUACGAGAAGGCAUUCCC
..(((.((((...(((((.......)))))......(((...((((((..((..(....)...))..)))))).(((((((((.........)))))).))))))...)))))))..... ( -36.60)
>DroYak_CAF1 21734 120 - 1
ACUGCGAUUCACCAUCGUCUCGAUCACGAUUAACUUUACAUUCCACAUUGGCUAUUAUGGCCUGUUGAUGUGGUUCCCGGAGCUCUUUAAUCGCUUCGAGGAGUACGAGAAGGCAUUCCC
..((((((.....))).(((((....................(((((((((((.....))))....)))))))((((((((((.........)))))).))))..)))))..)))..... ( -33.80)
>consensus
ACUGCGUUUCACCAUCGUUUCGAUUACGAUCAACUUUACAUUCCACAUUGGCUACUACGGCCUGUUGAUGUGGUUCCCGGAGCUCUUCAAUCGCUUCGAGGAGUACGAGAAGGCAUUCCC
..(((........(((((.......)))))...((((.(...((((((..((..(....)...))..))))))((((((((((.........)))))).))))...).)))))))..... (-31.16 = -30.72 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:56 2006