Locus 2446

Sequence ID X_DroMel_CAF1
Location 6,554,826 – 6,554,946
Length 120
Max. P 0.710530
window3974

overview

Window 4

Location 6,554,826 – 6,554,946
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -44.53
Consensus MFE -42.03
Energy contribution -42.37
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.94
SVM decision value 0.37
SVM RNA-class probability 0.710530
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6554826 120 - 22224390
UUGGAACGGAGGGAACUGGAACUGGAAUCAAAGGAGAUGGAGCUGCUGCAGGAGUAACAGGAGUAACCGCUGGCCAUCAACUGCAUGCCUUCCAAUGGUUCUGGGUCCUUCGGCUUCCAC
.((((((.((((((.(..(((((((((.((.((..((((((((((((.(.(......).).))))...)))..)))))..))...))..))))...)))))..).)))))).).))))). ( -41.50)
>DroSim_CAF1 10090 120 - 1
UUGGAACGGAGGGAACUGGAACUGGAAUCGAAGGAGAUGGAGCUGCUGCAGGAGUAACAGGAGUAACCGCUGGCCAUCAACUGCAUGCCUUCCAAUGGUUCUGGGUCCUUCUGCUUCCAC
.(((((((((((((.(..(((((....((....))..(((((..(((((((((....((((......).)))....))..))))).)).)))))..)))))..).)))))))).))))). ( -45.60)
>DroYak_CAF1 9976 120 - 1
GUGGAACGGAGGGAACUGGAACUGGAAUCGAAGGAGAUGGAGCUGCUGCAGGAGUAACAGGAGUAACCGCUGGCCAUCAACUGCAUGCCUUCCAAUGGUUCGGGGUCCUUCUGUUUCCAC
((((((((((((((.((.(((((....((....))..(((((..(((((((((....((((......).)))....))..))))).)).)))))..))))).)).)))))))).)))))) ( -46.50)
>consensus
UUGGAACGGAGGGAACUGGAACUGGAAUCGAAGGAGAUGGAGCUGCUGCAGGAGUAACAGGAGUAACCGCUGGCCAUCAACUGCAUGCCUUCCAAUGGUUCUGGGUCCUUCUGCUUCCAC
.(((((((((((((.(..(((((....((....))..(((((..(((((((((....((((......).)))....))..))))).)).)))))..)))))..).)))))))).))))). (-42.03 = -42.37 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:37 2006