Locus 2444

Sequence ID X_DroMel_CAF1
Location 6,550,571 – 6,550,691
Length 120
Max. P 0.706828
window3970

overview

Window 0

Location 6,550,571 – 6,550,691
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -24.53
Consensus MFE -23.80
Energy contribution -23.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.68
Structure conservation index 0.97
SVM decision value 0.37
SVM RNA-class probability 0.706828
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6550571 120 + 22224390
CAAGUACACGUAAAAUUAUUGUUCACGUCGCACAUUGUCGUGAGUUUGUAAUUACCAACCUCACCUCACCUCGAUUUGCCAUCUCUUUACCACCGACCGUUCAUAUGCGGUCUCAAUGUG
......((((((((.....((..((.((((.....((..(((((.(((.......))).)))))..))...)))).)).))....)))))....((((((......)))))).....))) ( -24.90)
>DroSim_CAF1 5587 120 + 1
CAAGUACACGUAAAAUUAUUGUUCACGUCGCACAUUGUCGUGAGUUUGUAAUUACCAACCUCACCUCACCUCGAUUUGCCAUCUCUUUACCACCGACCGUUCAUAUGCGGUCUCAAUGUG
......((((((((.....((..((.((((.....((..(((((.(((.......))).)))))..))...)))).)).))....)))))....((((((......)))))).....))) ( -24.90)
>DroYak_CAF1 5653 120 + 1
CAAGUACACGUAAAAUUAUUGUUCACGUCGCACAUUGUCGUGAGUUUGUAAUUACCAACCUCACCUCACCUCAAUAUCCCAUCUCUUUACCACCGACCGUUCAUAUGCGGUCUCAAUGUG
.......((((..(((....))).))))..(((((((..(((((.(((.......))).)))))..............................((((((......)))))).))))))) ( -23.80)
>consensus
CAAGUACACGUAAAAUUAUUGUUCACGUCGCACAUUGUCGUGAGUUUGUAAUUACCAACCUCACCUCACCUCGAUUUGCCAUCUCUUUACCACCGACCGUUCAUAUGCGGUCUCAAUGUG
.......((((..(((....))).))))..(((((((..(((((.(((.......))).)))))..............................((((((......)))))).))))))) (-23.80 = -23.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:33 2006