| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,548,239 – 6,548,359 |
| Length | 120 |
| Max. P | 0.547470 |
| Location | 6,548,239 – 6,548,359 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.44 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -18.21 |
| Energy contribution | -19.10 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6548239 120 + 22224390 AGAAAACACAACAAAUGCAGCCAAAUCGAAAGACAAAAGCAAAAGGCAAAUAAAGCGCAAAGACAGCGCAAAGUCAAAUGUCGUUUAAGUUCCAAGACUUUUUGCUUUGUUUGUUUUUGC .(((((((.((((((.((((((...((....))(....).....))).......((((.......))))((((((......(......)......)))))).)))))))))))))))).. ( -27.10) >DroSim_CAF1 3295 109 + 1 AGAAAACACAACAAAUGCAGCCAAAUCAAAAGACAAAAGCAAAAGGCAAAUAAAGCGC-----------AAAGUCAAAUGUCGUUUAAGUUCCAAGACUUUUUGCUUUGUUUGUUUUUGC ......................................(((((((.(((((((((((.-----------((((((......(......)......)))))).)))))))))))))))))) ( -24.30) >DroYak_CAF1 3256 120 + 1 AGAAAACACAAAAAAUGCAGCCAAAUCGAAAGACAAAAGCAAAUGGCAAAUACAACGCAAAGGCAGUGCAAAGUCAAAUGUCGUUGAAGUUCCAAGUCUUUUUGCUUUGUUUGUUUUUGC ...................((((..((....))(....)....)))).........((((((((((.(((((((.(((.(.(.(((......)))).).))).))))))))))))))))) ( -24.50) >consensus AGAAAACACAACAAAUGCAGCCAAAUCGAAAGACAAAAGCAAAAGGCAAAUAAAGCGCAAAG_CAG_GCAAAGUCAAAUGUCGUUUAAGUUCCAAGACUUUUUGCUUUGUUUGUUUUUGC .........................((....))((((((((((.((((((..(((((((..(((........)))...)).)))))(((((....)))))))))))...)))))))))). (-18.21 = -19.10 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:28 2006