Locus 2438

Sequence ID X_DroMel_CAF1
Location 6,540,876 – 6,540,974
Length 98
Max. P 0.871996
window3960

overview

Window 0

Location 6,540,876 – 6,540,974
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 86.41
Mean single sequence MFE -25.20
Consensus MFE -23.45
Energy contribution -23.23
Covariance contribution -0.22
Combinations/Pair 1.11
Mean z-score -1.63
Structure conservation index 0.93
SVM decision value 0.87
SVM RNA-class probability 0.871996
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6540876 98 + 22224390
GCUGUGAUACUUAAAUGUACAACAAGCAUACGGAUGGCGAUCCUGAGAAUGGGACCCACCCUUCAGGUUCAUCGAGGACAUUCUGUCAGAUUUGAAGG
(((((..(((......)))..)).)))....((.(((.(.((((......))))))))))((((((....(((...(((.....))).))))))))). ( -24.40)
>DroSec_CAF1 25250 91 + 1
GUUGUUAUACUUAAAUGUACAGCAAACAUAAAAAUGGAGAUCCUGAGAAUGGGACCCACCCUUCAGGGUCAUCGAGGACAUACUGUCAGAU-------
.(((((.(((......))).))))).............(((((((((...(((.....))))))))))))(((...(((.....))).)))------- ( -24.70)
>DroSim_CAF1 17582 91 + 1
GUUGUUAUACUUAAAUGUACAGCAAACAUAAGAAUGGUGAUCCUGAGAACGGGACCCACCCUUCAGGGUCAUCGAGGACAUACUGUUAGAU-------
.(((((.(((......))).))))).........(((((((((((((...(((.....))))))))))))))))..(((.....)))....------- ( -26.50)
>consensus
GUUGUUAUACUUAAAUGUACAGCAAACAUAAGAAUGGAGAUCCUGAGAAUGGGACCCACCCUUCAGGGUCAUCGAGGACAUACUGUCAGAU_______
((((((.(((......))).))).)))...........(((((((((...(((.....))))))))))))(((...(((.....))).)))....... (-23.45 = -23.23 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:25 2006