Locus 2436

Sequence ID X_DroMel_CAF1
Location 6,540,177 – 6,540,297
Length 120
Max. P 0.812737
window3958

overview

Window 8

Location 6,540,177 – 6,540,297
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.58
Mean single sequence MFE -26.80
Consensus MFE -22.28
Energy contribution -22.88
Covariance contribution 0.60
Combinations/Pair 1.13
Mean z-score -1.54
Structure conservation index 0.83
SVM decision value 0.65
SVM RNA-class probability 0.812737
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6540177 120 + 22224390
AUUUAAUUUAAUUCAUCUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCUGUUCACAGUAGGGAUGGUAAAAAGUAUCGAUACAUCGAUAGUUGAGCAGGCUGUCGAUUCAUUGGAAAA
............(((((((......((((.........)))).......(((....)))..))))))).........(((((..((((((((((.....))))))))))..))))).... ( -23.40)
>DroSec_CAF1 24618 120 + 1
AUUUAAUUUAACUCAUCUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCUGUUCACAGUAGGGAUGGUAAAAAGUAUCGAUACAUCGAUAGUCGAGCAGGCUGUGGAUGCAUUGGAAAA
......(((.((.((((((......((((.........)))).......(((....)))..)))))))).)))....(((((.((((.((((((.....)))))).)))).))))).... ( -26.40)
>DroSim_CAF1 16938 119 + 1
AUUUAAUUUAACUCAUCUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCUGUUCACAGUAGGGAUGGUUAAAAGUAUCGAUACAUCGAUAGUCGAGCAGGCUAUGGAUGCAUUG-AAAA
......((((((.((((((......((((.........)))).......(((....)))..))))))))))))....(((((.((((.((((((.....)))))).)))).))))-)... ( -31.20)
>DroEre_CAF1 13273 120 + 1
AUUUAAUUUAAUUCAUCUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCAGUUCACAGUAGGGAUGGUACAACUUAUCGAUACAUCGAUAGUUAAGCAGACUGUCGAUACAUUGGACAC
.........................((((.........))))....(((((((.....(((..(((((......)))))..)))((((((((((.....))))))))))..))))))).. ( -25.10)
>DroYak_CAF1 13112 120 + 1
AUUUAAUUUAAUUCAUUUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCAGUUCACAGUAGGGAUGGUAAAACUUAUCGAUACAUCGAUAGUCAAGCCGACUGUCGAUGCAUUGGACAA
.........................((((.........))))....(((((((.(...(((..(((((......)))))..)))((((((((((.....))))))))))).))))))).. ( -27.90)
>consensus
AUUUAAUUUAAUUCAUCUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCUGUUCACAGUAGGGAUGGUAAAAAGUAUCGAUACAUCGAUAGUCGAGCAGGCUGUCGAUGCAUUGGAAAA
............(((((((......((((.........)))).......(((....)))..))))))).........(((((.(((((((((((.....))))))))))).))))).... (-22.28 = -22.88 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:23 2006