Locus 2433

Sequence ID X_DroMel_CAF1
Location 6,530,614 – 6,530,709
Length 95
Max. P 0.576570
window3955

overview

Window 5

Location 6,530,614 – 6,530,709
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 77.07
Mean single sequence MFE -29.48
Consensus MFE -21.25
Energy contribution -20.45
Covariance contribution -0.80
Combinations/Pair 1.55
Mean z-score -0.95
Structure conservation index 0.72
SVM decision value 0.09
SVM RNA-class probability 0.576570
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6530614 95 + 22224390
GUCGCGCUUUGUUCACAACUUUGGCGGCUCUGUGGACAACGUCUUCCACUACAGCCAGCCAUCUGCGGCCAGUGAUUUCGUGGGCGCCCAGUCGA--
...((((((((.((((.....((((((((..(((((........)))))...)))).((.....)).))))))))...)).))))))........-- ( -30.70)
>DroGri_CAF1 4519 97 + 1
GUCGCGAUUCGUACACAAUUUUGGCGGAUCCGUCGAUAAUAUUUACAAUUACAGCCAGCCAACGGCGGCCGCCGCCUUUGUGGAUGGCCUUACCACA
((((((((((((.((......)))))))).)).))))................((((.(((..(((((...)))))....))).))))......... ( -28.60)
>DroEre_CAF1 3916 95 + 1
GUCGCGCUUUGUUCACAACUUUGGCGGCUCUGUGGACAACAUCUUCCACUACAGCCAGCCAUCGGCGGCUAGUGAUUUCGUGGGCGCCCAGGCUA--
.....(((..((.....))...)))((((..(((((........)))))...))))((((...((((.(((.((....))))).))))..)))).-- ( -32.70)
>DroYak_CAF1 3922 95 + 1
GUCGCGCUUUGUUCACAACUUUGGCGGCUCUGUGGACAAUAUCUUCCACUAUAGCCAGCCAUCGGCGGCCAGUGAUUUCGUAGGCGCUCAGGCUA--
(((((((((((.((((.....((((((((..(((((........)))))...)))).(((...))).))))))))...)).))))))...)))..-- ( -34.90)
>DroMoj_CAF1 4419 93 + 1
GUCCCGUUUCGUUCACAAUUUCGGCGGCUCCGUUGACAACAUUUACAACUACAGUCAGCCAACUGCUGCUGCAGCCUUUGUAGAUGGUCAGAC----
((((((...............))).)))....(((((..(((((((((((.(((.((((.....))))))).))...))))))))))))))..---- ( -25.46)
>DroAna_CAF1 4119 93 + 1
GUCGCGCUUUGUUCACAACUUUGGUGGCUCUGUCGAUAAUAUUUUUCAUUAUAGCCAGCCGUCGGCGGCCAGUGACUUUGUGGGUGCACU--CGA--
...((((((...((((........(((((.((..((.........))..)).)))))((((....))))..))))......))))))...--...-- ( -24.50)
>consensus
GUCGCGCUUUGUUCACAACUUUGGCGGCUCUGUGGACAACAUCUUCCACUACAGCCAGCCAUCGGCGGCCAGUGACUUCGUGGGCGCCCAGACGA__
...((((((...........(((((((((..(((((........)))))...)))).((.....)).))))).........)))))).......... (-21.25 = -20.45 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:20 2006