Locus 2432

Sequence ID X_DroMel_CAF1
Location 6,528,340 – 6,528,458
Length 118
Max. P 0.500000
window3954

overview

Window 4

Location 6,528,340 – 6,528,458
Length 118
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 83.84
Mean single sequence MFE -44.08
Consensus MFE -33.41
Energy contribution -34.22
Covariance contribution 0.81
Combinations/Pair 1.23
Mean z-score -1.52
Structure conservation index 0.76
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6528340 118 + 22224390
ACUAAUGCUGCCGGAGAACGAGCCCGGUAGCUCCAUCAUGCCCGGCAAGGUGAAUCCCACGCAAUGCGAAUCAAUGACCAUGCUGUGUGCCCAGGUGAUGGGCAAUCAGGUGGCGGUG
(((...((((((((.(......))))))))).(((((..((.(((((.(((.(......(((...)))......).))).))))).))(((((.....))))).....))))).))). ( -43.30)
>DroVir_CAF1 1650 118 + 1
ACUCAAGUUGCCAGAGAACGAGCCGGGCAGCUCCAUAAUGCCCGGCAAGGUGAAUCCCACACAGUGCGAAUCUCUAACCAUGAUUUGUGCACAGGUCAUGGGCAACCAUGUGGCCGUG
......(((((((((((....((((((((.........))))))))...(((.....)))..........)))))...(((((((((....)))))))))))))))((((....)))) ( -46.00)
>DroPse_CAF1 1628 118 + 1
ACUCAUGCUGCCGGAGAAUGAGCCGGGCAGCUCGAUUAUGCCUGGCAAGGUUAAUCCCACUCAGUGCGAGUCCAUUACCAUGAUCUGUGCCCAGGUUAUGGGCAACCAGGUGGCUGUC
......((..((.........((((((((.........))))))))..((((......((((.....))))......((((((((((....))))))))))..)))).))..)).... ( -45.00)
>DroGri_CAF1 1950 118 + 1
GCUUCAGUUGCCCGAGAAUGAGCCGGGCAGCUCCAUUAUGCCCGGCAAGGUGAAUCCCACACAGUGCGAAUCGUUGACCAUGAUAUGCGCCCAGGUUAUGGGCAAUCAGGUGGCGGUC
(((.(.((((((((((..((.((((((((.........))))))))...(((.....)))...(((((.(((((.....))))).))))).))..)).))))))))...).))).... ( -44.40)
>DroMoj_CAF1 1692 118 + 1
GCUCUCUCUGCCAGAGAACGAGCCAGGCAGCUCUAUAAUGCCGGGCAAGGUGAACCCCACCCAGUGCGAGUCCUUGACUAUGAUUUGUGCACAGGUGAUGGGUAACCAGGUUGCGGUA
(((((((.....)))))....(((.((((.........)))).)))..(((..((((((((..(..((((((.........))))))..)...))))..)))).))).....)).... ( -39.50)
>DroPer_CAF1 1625 118 + 1
ACUCAUGCUGCCGGAGAAUGAGCCGGGCAGCUCGAUUAUGCCUGGCAAGGUUAAUCCCACUCAGUGCGAGUCCAUUACCAUGAUCUGUGCCCAGGUUAUGGGUAACCAGGUGGCUGUC
......((..((.........((((((((.........))))))))..(((((.....((((.....))))......((((((((((....)))))))))).))))).))..)).... ( -46.30)
>consensus
ACUCAUGCUGCCGGAGAACGAGCCGGGCAGCUCCAUUAUGCCCGGCAAGGUGAAUCCCACACAGUGCGAAUCCAUGACCAUGAUCUGUGCCCAGGUUAUGGGCAACCAGGUGGCGGUC
......((..((.........((((((((.........))))))))..(((...((.(((...))).))........((((((((((....))))))))))...))).))..)).... (-33.41 = -34.22 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:19 2006