Locus 2430

Sequence ID X_DroMel_CAF1
Location 6,525,474 – 6,525,580
Length 106
Max. P 0.929801
window3950

overview

Window 0

Location 6,525,474 – 6,525,580
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 70.81
Mean single sequence MFE -20.07
Consensus MFE -17.14
Energy contribution -17.02
Covariance contribution -0.12
Combinations/Pair 1.14
Mean z-score 0.24
Structure conservation index 0.85
SVM decision value 1.20
SVM RNA-class probability 0.929801
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6525474 106 + 22224390
GUAAAAAAUAAGAAGAAAACACAUUGAAAGCAACUAAAACUCUCGUUAAUCCCCGCCAGAAACCCGUGGUCCAGGCCAUGGGCAUCCUGAAGAAGGCCGCCGCCGA
........(((..(((.......(((....))).......)))..)))........(((...((((((((....))))))))....))).....(((....))).. ( -20.34)
>DroSec_CAF1 5692 90 + 1
----------------AAACGCAUUUAAAGCAGCUAAAACUCUCGUUAAUCCCCGCCAGAAACCCGUGGUGCAGGCCAUGGGCAUCCUGAAGAAGGCCGCCGCCGA
----------------.............((.((...(((....))).......(((.....((((((((....))))))))..((.....)).))).)).))... ( -20.10)
>DroEre_CAF1 5975 104 + 1
GAAAGAUAUUAUACG--GAUACAUUGAAAGCGACUAAAACUGUCGAUAAUCCCCUCCAGAAACCCGUGGUGCAGGCCAUGGGCAUCCUGAAGAAGGCCGCCGCCGA
..............(--(((..........((((.......))))...)))).((.(((...((((((((....))))))))....))).))..(((....))).. ( -25.42)
>DroWil_CAF1 5730 82 + 1
---------UAU--A--UCU--------AUCUACCAAUCUUUUCGUUGUU---UUCCAGAAACCUGUUGUUCAGGCCAUGGGCAUAUUGAAAAAGGCCGCUGCCGA
---------...--.--...--------...........((((((.(((.---.((((....((((.....))))...)))).))).)))))).(((....))).. ( -15.70)
>DroYak_CAF1 5853 89 + 1
-----AAACUAU--G--CAUAAA--------UACUGAAACUCUCGUUGAUCCCCGCCAGAAACCCGUGGUGCAGGCCAUGGGCAUCCUGAAGAAGGCCGCCGCCGA
-----.....((--(--(.....--------.........(((.((.(....).)).)))...(((((((....))))))))))).........(((....))).. ( -18.80)
>consensus
_____A_A_UAU__G__AAUACAUU_AAAGCAACUAAAACUCUCGUUAAUCCCCGCCAGAAACCCGUGGUGCAGGCCAUGGGCAUCCUGAAGAAGGCCGCCGCCGA
........................................................(((...((((((((....))))))))....))).....(((....))).. (-17.14 = -17.02 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:15 2006