| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 834,036 – 834,129 |
| Length | 93 |
| Max. P | 0.752917 |
| Location | 834,036 – 834,129 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.14 |
| Mean single sequence MFE | -18.99 |
| Consensus MFE | -5.68 |
| Energy contribution | -6.08 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.30 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.752917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 834036 93 + 22224390 UGCAUCAGUCUAUUGCCUAAUAUGCGUUUAAACAG--AUUCCAUUAGAUCU------------------GUGUCCUGUCA-------AUAAUCACAUUUCUUCCGGUGCAACCCCCUACA ((((((.((.((((....)))).))......((((--(((......)))))------------------)).........-------.................)))))).......... ( -15.30) >DroSec_CAF1 34957 93 + 1 UGCAUCAGUCUAUUACCUAAUAUGCAUUUAAACAG--AUUCGAUUAGAUCU------------------GUGCCCUUUCA-------AUAAUCUCUUUUCUUCCGGUGCAACCCCCUACA ((((((.((.((((....)))).))......((((--(((......)))))------------------)).........-------.................)))))).......... ( -15.60) >DroSim_CAF1 31329 93 + 1 UGCAUCAGUCUAUUACCUAAUAUGCAUUUAAACAG--AUUCGAUUGGAUCU------------------GUGUCCCUUCA-------AUAAUCUCAUUUCUUCCGGUGCAACCCCCUACA ((((((.((.((((....)))).))......((((--((((....))))))------------------)).........-------.................)))))).......... ( -17.80) >DroEre_CAF1 34345 97 + 1 UGCAUCGGUAUAUU-CCUAAUAUGCGCUCGAACAG--AUUCAAUUAGAUCUCCCACC-----------UGUA-CCUGUAU-------AUAAUCGCAUUUUUUCCGGUGCA-CCGCCCAUA ((((((((......-......(((((.......((--(((......)))))......-----------((((-....)))-------)....))))).....))))))))-......... ( -17.13) >DroYak_CAF1 31683 119 + 1 CACAUCAGUAUAUUGCCUAAUAUGCGUUCAAACAGUGCUUCAAGUAGAUCUCCCUCCAUAUGGAGCACUGUGUCCAGUAUAUAAUGUAUAAUCGCAUUUCUUCCGGUGCA-CCGCCUAUA .......(((((((.....((((((......(((((((((((.((.((......)).)).))))))))))).....)))))))))))))....(((((......))))).-......... ( -29.10) >consensus UGCAUCAGUCUAUUACCUAAUAUGCGUUUAAACAG__AUUCAAUUAGAUCU__________________GUGUCCUGUCA_______AUAAUCGCAUUUCUUCCGGUGCAACCCCCUACA ((((((.((.((((....)))).))..............((.....))........................................................)))))).......... ( -5.68 = -6.08 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:47 2006