Locus 2429

Sequence ID X_DroMel_CAF1
Location 6,505,286 – 6,505,386
Length 100
Max. P 0.663474
window3949

overview

Window 9

Location 6,505,286 – 6,505,386
Length 100
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 70.88
Mean single sequence MFE -35.00
Consensus MFE -22.29
Energy contribution -22.37
Covariance contribution 0.08
Combinations/Pair 1.26
Mean z-score -1.29
Structure conservation index 0.64
SVM decision value 0.27
SVM RNA-class probability 0.663474
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6505286 100 - 22224390
UUGGCGCGUGUG--UGGGUGU--GUUGGUGCGUGUUCAACUGGCAUUCUCAUGUGCACUUAAGAGUAUGCUACGUUUUAGAGCGGUGA----------------UCUUGUGCAUUUUGCC
..(((......(--((((.((--((..((.........))..)))).)))))((((((..((((...((((.(......)))))....----------------))))))))))...))) ( -30.40)
>DroSec_CAF1 58978 118 - 1
UUGGCGCGUGUG--UGGGUGUGCGUGGGUGCGCGUUCAACUGGCAUUCUCCUGCGCACUUAAAAGUAUGCAACGGUUUACAGCGGUGAUCCAGUGCGUGCUCGAUCUUUUGCAUUUUGCC
..((((.((((.--((((((((((.((((((.((......))))))))...))))))))))..((((((((..((.((((....)))).))..)))))))).........))))..)))) ( -40.60)
>DroYak_CAF1 58854 99 - 1
UUGGCGCGCGUGCGUAGGUAU----GUGUGCGCGUUUCACCGGCAUUCUCUCGCACACCUAAAAGUGUGCAAUGGUUU-GUGUGCUGA----------------UUUUGUGCAUUUUGCU
..((((((((..(((....))----)..)))))))).....((((.......((((((......))))))........-(((..(...----------------....)..)))..)))) ( -34.00)
>consensus
UUGGCGCGUGUG__UGGGUGU__GUGGGUGCGCGUUCAACUGGCAUUCUCAUGCGCACUUAAAAGUAUGCAACGGUUUAGAGCGGUGA________________UCUUGUGCAUUUUGCC
..(((((((((...(((((((....((((((.((......))))))))......)))))))...))))))...........((((.(((((((......)))))))..)))).....))) (-22.29 = -22.37 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:14 2006