| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,504,145 – 6,504,252 |
| Length | 107 |
| Max. P | 0.841036 |
| Location | 6,504,145 – 6,504,252 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 77.15 |
| Mean single sequence MFE | -40.50 |
| Consensus MFE | -22.12 |
| Energy contribution | -23.60 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6504145 107 - 22224390 UGCUCCGUCUGCUCGGCCUCCUCGGCGGCCGUAAAGAAUGGAUGCUUUAGUGCCUCUUCGGCGGUAAUUCGUUUAUGGGGAUUAAUCUCGAGCAGGCGAUCCAGUAG ((((.(((((((((((((.(....).)))).......(((((((..(((.((((.....)))).)))..))))))).((((....)))))))))))))....)))). ( -42.00) >DroVir_CAF1 111614 89 - 1 GG---CGCCUGC------U---------CGGUGAAGAACGGAUGAUUGAGCGCCUGUUCGGCGGUGAUGCGCUUAUGCGGAUUGAUCUCGAGCAGGCGGCUGAGCAG ..---...((((------(---------((((......(((....)))..(((((((((((.((((((.(((....))).))).))))))))))))))))))))))) ( -40.30) >DroSec_CAF1 57858 107 - 1 CGCUCCGUCUGCUCGGUCUCCUCGACGCCCGUAAAGAAUGGAUGCUCUAGUGCCUCUUCGGCGGUGAUUCGUUUAUGGGGAUUAAUCUCGAGCAGGCGAUCCAGUAG .....(((((((((((((.....))).((((((((((((.(.((((..((.....))..)))).).)))).)))))))).........))))))))))......... ( -39.60) >DroEre_CAF1 57286 107 - 1 UGCUCCGUCUGUUCGGCCUCCUCAGCGGCCGUAAAGAAUGGAUGCUUUAGUGCCUCUUCGGCGGUGAUCCGAUUAUGGGGAUUAAUUUCGAGUAGACGCUGCAGUAG ...(((((((...(((((........)))))...)).)))))((((.(((((.((.(((((...((((((........))))))...))))).)).))))).)))). ( -37.90) >DroYak_CAF1 57634 107 - 1 UGCUCCGUCUGCUCGGCCUCCUCGGCGGCCGUAAAGAAUGGAUGCUUUAGUGCCUCGUCGGCGGUAAUCCGCUUAUGGGGAUUAAUCUCGAGCAGGCGAUGCAGUAG (((..(((((((((((((.(....).))))..........((....(((((.((((((.(((((....))))).)))))))))))..)))))))))))..))).... ( -49.00) >DroMoj_CAF1 95338 95 - 1 GG---CGUCUGAU---GCUCCA------UGGUAAAGAAUGGAUGAUUGAGCGCCUGCUCGGCGGUAAUACGCUUGUGGGGGUUUAUUUCGAGCAAGCGUCCCAGCAG ((---(((..(((---..((((------(........)))))..)))..)))))((((.((.......((((((((..(((.....)))..)))))))))).)))). ( -34.21) >consensus UGCUCCGUCUGCUCGGCCUCCUCGGCGGCCGUAAAGAAUGGAUGCUUUAGUGCCUCUUCGGCGGUAAUCCGCUUAUGGGGAUUAAUCUCGAGCAGGCGAUCCAGUAG .....((((((((((.............((((.....)))).....(((((.((((...(((((....)))))...)))))))))...))))))))))......... (-22.12 = -23.60 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:14 2006