| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,501,608 – 6,501,706 |
| Length | 98 |
| Max. P | 0.711127 |
| Location | 6,501,608 – 6,501,706 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 83.33 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -17.95 |
| Energy contribution | -17.83 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6501608 98 - 22224390 CUACAACAGUCUGAAUUG-AAAACCACGCAUGUGU-------GAUGUGCGCGGGCUGUAAACAAACGUUACAGCUGCCACACGGAAAGAAAUUUUGGAUAUAUAUU ........(((..((...-....((.(((....))-------).((((.((((.((((((.......)))))))))))))).))........))..)))....... ( -23.36) >DroSec_CAF1 55426 98 - 1 CUACAACAGUUUGUAUCG-AAAACCACGCAUGUGU-------GAUGUGAGCGGUCUGUAAACAAACGUUACAGCUGCCACACGGAAAGAAAUUGUGGAUAUAUAUU ((((((...(((...(((-.....((((....)))-------).((((.((((.((((((.......)))))))))))))))))...))).))))))......... ( -25.90) >DroEre_CAF1 54988 92 - 1 CUAC---AGUCUGUGCCG-AAAACCACGCAUGUGU-------GAUGUGCGCGGGCUGUAAACAAACAUUACAGCUGCCACACGGAAAGAAAUUAUG---ACAUAUU ....---..(((...(((-.....((((....)))-------).((((.((((.((((((.......)))))))))))))))))..))).......---....... ( -25.60) >DroYak_CAF1 55225 100 - 1 CUAC---AGUCUGUACCUUCACACCACGCAUGUGUGAUGUGUGAUGUGCGCGGGCUGUAAACAAACCGUACAGCUGCCACACGGUAAGAAAUUAUG---AUAUAUC ....---..(((.((((.((((((((((....))))..))))))((((.((((.(((((.........))))))))))))).))))))).......---....... ( -30.20) >consensus CUAC___AGUCUGUACCG_AAAACCACGCAUGUGU_______GAUGUGCGCGGGCUGUAAACAAACGUUACAGCUGCCACACGGAAAGAAAUUAUG___AUAUAUU .........(((...(((......(((....)))..........((((.((((.((((((.......)))))))))))))))))..)))................. (-17.95 = -17.83 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:12 2006