Locus 2424

Sequence ID X_DroMel_CAF1
Location 6,487,261 – 6,487,361
Length 100
Max. P 0.943169
window3941

overview

Window 1

Location 6,487,261 – 6,487,361
Length 100
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 79.66
Mean single sequence MFE -16.08
Consensus MFE -10.75
Energy contribution -10.87
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -2.24
Structure conservation index 0.67
SVM decision value 1.33
SVM RNA-class probability 0.943169
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6487261 100 - 22224390
UUCUACACUUAGUCUUCUUAUCCAUAUGGUUCCCGGUUCUUCUCUUG--UUUUCAUUUUUCUAUUCCCCUCCCCACCCCCCUGGGAAUAGAACUUUGAGUGC
.....(((((((.........((....))..................--.........((((((((((..............))))))))))..))))))). ( -17.94)
>DroSec_CAF1 41466 86 - 1
UUCUA--CUUAGUCUUCUUAUCCAUAUGGUUCCCAGUUCUUCUCUUG--UUUUCAUUUUUCUU------------CCCCCCUGGGAAUAGAACUUUGAGUGC
...((--(((((..((((...((....))(((((((...........--..............------------.....))))))).))))..))))))). ( -15.41)
>DroYak_CAF1 41232 82 - 1
UUCUA--CUUAGUCUUCUUAUCCAUAUGGUUCCCAGUUCUGCUCUGGUGUUUUCUUUUUU------------------CCCUGGGAAUAAAACGUUGAGUGG
..(((--(((((.........((....))(((((((.........((......)).....------------------..))))))).......)))))))) ( -14.89)
>consensus
UUCUA__CUUAGUCUUCUUAUCCAUAUGGUUCCCAGUUCUUCUCUUG__UUUUCAUUUUUCU_____________CCCCCCUGGGAAUAGAACUUUGAGUGC
.......(((((..((((...((....))(((((((............................................))))))).))))..)))))... (-10.75 = -10.87 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:07 2006