Locus 2423

Sequence ID X_DroMel_CAF1
Location 6,482,266 – 6,482,365
Length 99
Max. P 0.720708
window3940

overview

Window 0

Location 6,482,266 – 6,482,365
Length 99
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.46
Mean single sequence MFE -27.87
Consensus MFE -19.80
Energy contribution -19.63
Covariance contribution -0.16
Combinations/Pair 1.15
Mean z-score -1.95
Structure conservation index 0.71
SVM decision value 0.40
SVM RNA-class probability 0.720708
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6482266 99 + 22224390
GGACCGUGUCUAAUCCGAUUUUGACUUUAUUAACGGUGCAAUUUGUACCGACAACUGCCAGACGGGAACCAACUGGCAGUCCGA-AACUCUUAACUCUUU
((((.(((((.((......)).)))........((((((.....))))))))...((((((..((...))..))))))))))..-............... ( -27.10)
>DroPse_CAF1 43376 86 + 1
AGGCCGUGUCCAAUCCGAUUUUGACUUUAUUAACGCUGCAAUUUGUAGCGACCACUGGCAGUCCGGACGGGAACGGCAGUCAUA-GU-------------
..(((((.(((..((((...(((.((.......((((((.....))))))......)))))..))))..)))))))).......-..------------- ( -29.52)
>DroSim_CAF1 34814 99 + 1
GGACCGUGUCUAAUCCGAUUUUGACUUUAUUAACGGUGCAAUUUGUACCGACAACUGCCAGACGGGAACCAACUGGCAGUCCGA-AACUCUUAACUCUUU
((((.(((((.((......)).)))........((((((.....))))))))...((((((..((...))..))))))))))..-............... ( -27.10)
>DroEre_CAF1 35712 100 + 1
GGACCGUGUCUAAUCCGAUUUUGACUUUAUUAACGGUGCAAUUUGUACCGACAACUGCCAGACGGGAACCAACUGGCAGUCCGAAAACUCUUAACUCUUU
((((.(((((.((......)).)))........((((((.....))))))))...((((((..((...))..)))))))))).................. ( -27.10)
>DroYak_CAF1 36334 99 + 1
GGACCGUGUCUAAUCCGAUUUUGACUUUAUUAACGGUGCAAUUUGUACCGACAACUGCCAGACGGGAACCAACUGGCAGUCCGA-AACUCUUAACUCUUU
((((.(((((.((......)).)))........((((((.....))))))))...((((((..((...))..))))))))))..-............... ( -27.10)
>DroPer_CAF1 45689 86 + 1
AGGCCGUGUCCAAUCCGAUUUUGACUUUAUUAACGCUGCAAUUUGUAGCGACCACUGGCAGUCCGGACGGGAUCGGCAGUCAGA-GU-------------
..((((.((((..((((...(((.((.......((((((.....))))))......)))))..))))..)))))))).......-..------------- ( -29.32)
>consensus
GGACCGUGUCUAAUCCGAUUUUGACUUUAUUAACGGUGCAAUUUGUACCGACAACUGCCAGACGGGAACCAACUGGCAGUCCGA_AACUCUUAACUCUUU
.......(((.((......)).)))........((((((.....))))))...((((((((..(.....)..)))))))).................... (-19.80 = -19.63 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:06 2006