| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,471,970 – 6,472,075 |
| Length | 105 |
| Max. P | 0.526889 |
| Location | 6,471,970 – 6,472,075 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.49 |
| Mean single sequence MFE | -28.71 |
| Consensus MFE | -16.66 |
| Energy contribution | -17.55 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6471970 105 + 22224390 AA--AAAAAUGAAGGCGCCGGCUCUCCUUUUGUCU--GGC-GUCUAUUGAUUUAGCCGUAAAUGACAAAACG----AAGCGGAGACAAAGC-GUCAAAAAGGAAACUCCGGCAAG ..--............(((.(((.((.(((((((.--.((-(.(((......))).)))....))))))).)----))))((((((.....-))).....(....)))))))... ( -29.90) >DroPse_CAF1 33532 96 + 1 -------AAUGGUGUUGCCUGUUGUCCUUUUGUGUCCGUCUCUCUAUUGAUUUAGCUGUGAACGUCUAACUG----A----GAGACAAAGC-UG---GGACGUAAAUUCGCCAAG -------..(((((........((((((...((....(((((((.......((((.((....)).))))..)----)----)))))...))-.)---)))))......))))).. ( -27.44) >DroSec_CAF1 26263 107 + 1 AAAAAAAAAUGAAGGCGCCGGCUCUCCUUUUGUCU--GGC-GUCUAUUGAUUUAGCCGUAAAUGACAAAACG----AAACGGAGACAAAGC-GUCAAAAAGGAAACUCCGGCAAG ................(((((.((((((((((((.--.((-(.(((......))).)))....)))))))..----....)))))......-.......((....)))))))... ( -28.60) >DroSim_CAF1 26596 105 + 1 AA--AAAAAUGAAGGCGCCGGCUCUUCUUUUGUCU--GGC-GUCUAUUGAUUUAGCCGUAAAUGACAAAACG----AAACGAAGACAAAGC-GUCAAAAAGGAAACUCCGGCAAG ..--............(((((...((((((((((.--.((-(.(((......))).)))....))))))).)----)).....(((.....-)))....((....)))))))... ( -27.20) >DroEre_CAF1 25300 101 + 1 -------AAUGGAGGCGCCGGUUCUCCUUUUGUCU--GGC-GUCUAUUGAUUUAGCCGUAAAUGACACAACG----AAACGGAGACAAAGCCGUCAAAAAGGAAACUCCGGCAAG -------.........(((((...((((((((((.--.((-(.(((......))).)))....)))......----..((((........))))..)))))))....)))))... ( -29.60) >DroYak_CAF1 25876 104 + 1 -------AAUGGAGGCGCCGGUUCUGCUUUUGUCU--GGC-GUCUAUUGAUUUAGCCGUAAAUGACAAAAUGACAAAAACGGAGACAAAGC-GUCCAAAAGGAAACUCCGGCAAG -------.........((((((((((.(((((((.--(((-(((....)))...)))((.....)).....))))))).)))))....((.-.(((....)))..)))))))... ( -29.50) >consensus _______AAUGAAGGCGCCGGCUCUCCUUUUGUCU__GGC_GUCUAUUGAUUUAGCCGUAAAUGACAAAACG____AAACGGAGACAAAGC_GUCAAAAAGGAAACUCCGGCAAG ................(((((......((((((((..(((.(((....)))...)))((.....))................)))))))).........((....)))))))... (-16.66 = -17.55 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:02 2006