Locus 2412

Sequence ID X_DroMel_CAF1
Location 6,455,726 – 6,455,821
Length 95
Max. P 0.611770
window3920

overview

Window 0

Location 6,455,726 – 6,455,821
Length 95
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 77.39
Mean single sequence MFE -25.13
Consensus MFE -15.48
Energy contribution -16.40
Covariance contribution 0.92
Combinations/Pair 1.19
Mean z-score -1.42
Structure conservation index 0.62
SVM decision value 0.16
SVM RNA-class probability 0.611770
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6455726 95 + 22224390
UCAAAUCCACAA------CCAUCUCCACCUCGAUCGCGACCAAGCAUUUUGAGCUCCGGCUCCAUGUCGUUGGCAUGUGGGUUGUGGGUGAAAUGAAACCA
(((.((((((((------(((((........)))((((.((((((((...((((....)))).))))..))))..))))))))))))))....)))..... ( -29.20)
>DroSec_CAF1 10197 89 + 1
UCAAAUCCAU------------CUCCACCUCGAUCGCCACCGAGCAUUUCGAGCUCCGGCUCCAUGUCGUUGGCAUGUGGGUUGUGGGUGAAAUGAAACCA
.......(((------------(..((.((((...((((.(((.(((...((((....)))).)))))).))))...)))).))..))))........... ( -27.20)
>DroSim_CAF1 10167 101 + 1
UCAAAUCCAUCUCCAUCUCCAUCUCCACCUCGAUCGCCACCGAGCAUUUCGAGCUCCGGCUCCAUGUCGUUGGCAUGUGGGUUGUGGGUGAAAUGAAACCA
.............(((...((((..((.((((...((((.(((.(((...((((....)))).)))))).))))...)))).))..))))..)))...... ( -27.40)
>DroEre_CAF1 9486 88 + 1
UCACAUCCAUCU------------CCAUCUCCGUCUCCA-CAACCAUUUUGAGCUCCGGCUCCAUGUCGUUGGCAUGUGGGUUGUGGGUGAAAUGAAACCA
............------------...((....((((((-(((((.....((((....))))(((((.....)))))..))))))))).))...))..... ( -26.50)
>DroYak_CAF1 10492 82 + 1
UCAAAUCCAUCU------------CCAUC------UACA-CAACCAUUUUGAGCUCCGGCUCCAUGUCGUUGGCAUAUGGGUUGUGGGUGAAAUGAAACCA
............------------.....------..((-(((((.....((((....)))).((((.....))))...)))))))(((........))). ( -21.90)
>DroAna_CAF1 12668 89 + 1
UCAUCUGUAGCU------------CCAUCUCCAUAUACUAUAUAUAUAUAUAUUGCCAUCAGCAUGUCGUUGCCAUGUGGGUUGUGGGUGAAAUGAAACCA
(((((..(((((------------((((..........(((((....))))).........(((......))).))).))))))..))))).......... ( -18.60)
>consensus
UCAAAUCCAUCU____________CCACCUCGAUCGCCACCAAGCAUUUUGAGCUCCGGCUCCAUGUCGUUGGCAUGUGGGUUGUGGGUGAAAUGAAACCA
............................................((((((..(((((((((((((((.....))))).)))))).))))))))))...... (-15.48 = -16.40 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:49 2006