Locus 2411

Sequence ID X_DroMel_CAF1
Location 6,454,898 – 6,454,990
Length 92
Max. P 0.873308
window3919

overview

Window 9

Location 6,454,898 – 6,454,990
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 76.64
Mean single sequence MFE -24.09
Consensus MFE -9.98
Energy contribution -9.66
Covariance contribution -0.32
Combinations/Pair 1.21
Mean z-score -2.10
Structure conservation index 0.41
SVM decision value 0.88
SVM RNA-class probability 0.873308
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6454898 92 - 22224390
UUAUCCUUUACCUUUGCUAGGGGAUCCAUCUAUUUUGUAUCUACUUUGAGGUAGCCAAAUGAGUUACCUGCC-----AGAU-----------------------AUUGUAGAUGAACCUC
..((((((((.......)))))))).(((((((...((((((......((((((((....).)))))))...-----))))-----------------------)).)))))))...... ( -25.20)
>DroSec_CAF1 9430 92 - 1
UUAUCCUUUACCUUUGCUAGGGGAUCCAUCUAUUUUGUAUCUACUUUGAAGUAACCAAAUGAGUUACCUGCC-----AGAU-----------------------AUUGUAGAUGAUCCUC
...................(((((((.((((((...((((((........((((((....).))))).....-----))))-----------------------)).))))))))))))) ( -22.52)
>DroSim_CAF1 9397 92 - 1
UUAUCCUUUACCUUUGCUAGGGGAUCCAUCUAUUUUGUAUCUACUUUGAAGUAACCAAAUGAGCUACCUGCC-----AGAU-----------------------AUGGUAGAUGAUCCUC
...................(((((((.(((((((..(((((((((....))))......((.((.....)))-----))))-----------------------)))))))))))))))) ( -22.00)
>DroEre_CAF1 8677 119 - 1
UUAUCCUUAACCUUUGUUAGGGGAU-CAUCUAUUUUGUUUCUACUUUGAAAUACCCAAAUGAGUUACCUGCCUGCCAAAAGGAUGAAAUGCUAUUUCUUUUUUGAGUAAAGACGAUCCUC
.....((((((....))))))((((-(.(((....((((((......))))))...................(((((((((...(((((...))))).)))))).))).))).))))).. ( -22.20)
>DroYak_CAF1 9662 114 - 1
UUAUCCUUUACCUUUGUUAGGGGAU-CAUCUAUUUUGUGUCUACUUUAAAAUACCCACAUGAGUUACCUGCC-----AGAGGGUGAGAUCCUAGUUCUUUAUGGAGUAAAGAUGAUCCUC
...................((((((-(((((((((..((...(((......(((((...((.((.....)))-----)..))))).......)))....))..))))..))))))))))) ( -28.52)
>consensus
UUAUCCUUUACCUUUGCUAGGGGAUCCAUCUAUUUUGUAUCUACUUUGAAGUAACCAAAUGAGUUACCUGCC_____AGAU_______________________AUUGUAGAUGAUCCUC
...................((((((.(((((((((((.........))))))).........((.....)).......................................)))))))))) ( -9.98 =  -9.66 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:48 2006