Locus 2408

Sequence ID X_DroMel_CAF1
Location 6,441,025 – 6,441,136
Length 111
Max. P 0.760591
window3915

overview

Window 5

Location 6,441,025 – 6,441,136
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 90.27
Mean single sequence MFE -35.76
Consensus MFE -26.00
Energy contribution -26.72
Covariance contribution 0.72
Combinations/Pair 1.13
Mean z-score -2.14
Structure conservation index 0.73
SVM decision value 0.50
SVM RNA-class probability 0.760591
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6441025 111 + 22224390
AACGGAUGGCACAAACUGGAGGGCAAACUGCAGCAGGAGCAGCGGCAAUGGUGACAGCGGCGUCAACAUCUGCAGUUUGUCUUAGAUAAUAGAUUCGAAUAAGUUAGCCCA
.......(((...((((..((((((((((((((........((.((..((....)))).))........)))))))))))))).((........)).....)))).))).. ( -35.09)
>DroSec_CAF1 4220 111 + 1
AUCGGAUGGCACAAACUGGAGGGCAAACUGCAGCAGGAGCAGCGGCAAUGGUGACAGCGGCGGCAACAUCUGCAGUUUGUCUUAGAUAAGAGAUUCGAAUAAGUUAGUUCA
.((((((..(.........((((((((((((((..(..((.((.((..((....)))).)).))..)..))))))))))))))......)..))))))............. ( -38.06)
>DroSim_CAF1 4270 111 + 1
AUCGGAUGGCACAAACUGGAGGGCAAACUGCAGCAGGAGCAGCGGCAAUGGUGACAGCGGCGGCAACAUCUGCAGUUUGUCUUAGAUAAGAGAUUCGAAUAAGUUAGUUCA
.((((((..(.........((((((((((((((..(..((.((.((..((....)))).)).))..)..))))))))))))))......)..))))))............. ( -38.06)
>DroEre_CAF1 3999 102 + 1
AUCGGAUGGCACAAACUGGAGGGCAAACUGCAGCAG---------CAGUUGUGACAGCGGCGGCAACAUCUGUAGUUUGUCUUAGAAAAGAGAUUCGCAUAAGUUCGCCCA
..(((((.((.........((((((((((((((..(---------(.((((...)))).))(....)..)))))))))))))).(((......)))))....))))).... ( -31.00)
>DroYak_CAF1 4190 111 + 1
AUCGGAUGGCACAAACUGGCGGGCAAACUGCAGCAGGAGCAGCGGCAAUGGUGUCGGCGGCGGCAACAUAUGUAGUUUGUCCUAGAUAAGAGAUUCGCAUAAGUUAGCCCA
.......(((...((((.((((((((((((((((....((..(((((....))))))).))(....)...))))))))))))..((........))))...)))).))).. ( -36.60)
>consensus
AUCGGAUGGCACAAACUGGAGGGCAAACUGCAGCAGGAGCAGCGGCAAUGGUGACAGCGGCGGCAACAUCUGCAGUUUGUCUUAGAUAAGAGAUUCGAAUAAGUUAGCCCA
.......(((...((((..((((((((((((((..(..((.((.((..........)).)).))..)..)))))))))))))).((........)).....)))).))).. (-26.00 = -26.72 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:45 2006