| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,436,839 – 6,436,935 |
| Length | 96 |
| Max. P | 0.943374 |
| Location | 6,436,839 – 6,436,935 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 72.65 |
| Mean single sequence MFE | -36.84 |
| Consensus MFE | -22.00 |
| Energy contribution | -22.82 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.943374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6436839 96 - 22224390 GCCGGUAUCUUGGUGUUCAUACUCCCGAUGAGGGCCUGCAGCGACAGGUCGUAUAGGGUCUUCGGGGAGUUGGGAUUUAUUUUGGG-------GAUCAAGACC .......(((((((.((((.((((((..(((((((((...((((....))))...)))))))))))))))............))))-------.))))))).. ( -36.22) >DroVir_CAF1 36 100 - 1 GUCGGCACUUUGCAGUCCAGGCCGUUGACAACGGCCAUCAAUGACAGAUCGUACAGUGGCUCGGGGCUGUUGUUGUUGU-UGUGCCCGGAGGC--CGAUGACA ((((((.(((((((.....((((((.....))))))..(((..(((......((((..((.....))..)))))))..)-)))))..))))))--)))).... ( -38.50) >DroSec_CAF1 119 91 - 1 GCCGGAAUCUUGGUGUUCAUACUCCCGAUGAGGGCCUCCAGCGACAGGUCGUAUAGGGUCUUCGGGGAGUUGGGAAAUAAUCUGGG-------GCUCA----- ....((..((..(..(((..((((((..(((((((((...((((....))))...)))))))))))))))...))).....)..))-------..)).----- ( -35.70) >DroSim_CAF1 20 91 - 1 GCCGGAAUCUUGGUGUUCAUACUCCCGAUGAGGGCCUCCAGCGACAGGUCGUAUAGGGUCUUCGCGGAGUUGGGAAAUAAUCUGGG-------GCCCA----- ...((..(((.(((.(((..(((((.(.(((((((((...((((....))))...)))))))))))))))...)))...))).)))-------..)).----- ( -33.30) >DroEre_CAF1 21 96 - 1 GCCGGAAUCUUGGUGCUCAUGCUCCCGAUGAGGGCCUGCAGCGACAGGUCGUAUAGGGCCUUUGGAGAGUUGGGAUUUGGAUUGGG-------AACCAGGACU .......(((((((.((((...(((((((((((((((...((((....))))...)))))))).....))))))).......))))-------.))))))).. ( -37.50) >DroYak_CAF1 21 96 - 1 GCCGGAAUCUUGGUGUUCAUACUCCCGAUGAGGGCCUGCAGCGACAGGUCGUAUAGGGCCUUCGGGGUGUUGGGAAUUGGAUUUUG-------GAUCAGGGCU .(((((((((....((((..((.(((..(((((((((...((((....))))...)))))))))))).))...)))).))))))))-------)......... ( -39.80) >consensus GCCGGAAUCUUGGUGUUCAUACUCCCGAUGAGGGCCUGCAGCGACAGGUCGUAUAGGGUCUUCGGGGAGUUGGGAAUUAAUUUGGG_______GACCA_GAC_ (((((....))))).((((.((((((..(((((((((...((((....))))...)))))))))))))))))))............................. (-22.00 = -22.82 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:42 2006