| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,436,203 – 6,436,294 |
| Length | 91 |
| Max. P | 0.833279 |
| Location | 6,436,203 – 6,436,294 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 86.03 |
| Mean single sequence MFE | -23.45 |
| Consensus MFE | -18.40 |
| Energy contribution | -19.27 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.833279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6436203 91 + 22224390 GCAAUUGGACAAUUGGAUGUGUUCCGCUUCCGAGUUGUGUAAGUGCUAGAAAAUUUUUUUUCCCCCCAAUCGAGCGAAAGCAAAACAAUCG (((.(((.(((((((((.(((...))).))).)))))).))).)))..(((((....)))))...........((....)).......... ( -22.10) >DroSec_CAF1 53129 88 + 1 GCAUUUAGACAAUUGGAUGUGUUCCGCUUCCGAAUUGUGUAAGUGCCGGAGAAUUUUUUUUC---CCAAUCGAGCGAAAGCAAAACAAUCG (((((((.(((((((((.(((...))).))).)))))).))))))).((((((....)))))---).......((....)).......... ( -29.20) >DroSim_CAF1 52727 88 + 1 GCAUUUAGACAAUUGGAUGUGUCCCGCUUCCGAAUUGUGUAAGUGCUGGAGAAUUUUUUUUC---CCAAUCGAGCGAAAGCAAAACAAUCG (((((((.(((((((((.(((...))).))).)))))).))))))).((((((....)))))---).......((....)).......... ( -29.30) >DroEre_CAF1 53523 81 + 1 CCA-UUAGACAAUUAGAUGUAUUCCGAUUCCGAAUUGUGUAAGUGCUAGAGAAUU------C---UCAAUCGUGCGAAGGCAAAACAAACG ...-.............(((....(((((..(((((.(.((.....)).).))))------)---..)))))(((....)))..))).... ( -13.20) >consensus GCAUUUAGACAAUUGGAUGUGUUCCGCUUCCGAAUUGUGUAAGUGCUAGAGAAUUUUUUUUC___CCAAUCGAGCGAAAGCAAAACAAUCG (((((((.(((((((((.((.....)).))).)))))).)))))))...........................((....)).......... (-18.40 = -19.27 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:41 2006