Locus 2404

Sequence ID X_DroMel_CAF1
Location 6,436,042 – 6,436,136
Length 94
Max. P 0.852167
window3910

overview

Window 0

Location 6,436,042 – 6,436,136
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 85.20
Mean single sequence MFE -29.06
Consensus MFE -20.00
Energy contribution -22.00
Covariance contribution 2.00
Combinations/Pair 1.08
Mean z-score -2.28
Structure conservation index 0.69
SVM decision value 0.79
SVM RNA-class probability 0.852167
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6436042 94 - 22224390
ACUUUUUCUUUAUUUUCGUCUGUCGAUUUAG--UAACUAGUGGUGGCAAACAGCUGGUCCUAUCGAUAGACACUGCUGCGGUUCGUCACCGCGGAC
.................((((((((((....--..((((((.((.....)).))))))...))))))))))....(((((((.....))))))).. ( -32.20)
>DroSec_CAF1 52969 94 - 1
ACUUUUUCUUUAUUUUCGUCUGUCGAUUUAG--UAACUAGUGGUGGCAACCAGCUGGUCCUAUCGAUAGACACUGCUGCGGGUCUUCACCGCGGAA
.................((((((((((....--..(((((((((....)))).)))))...))))))))))....((((((.......)))))).. ( -34.40)
>DroSim_CAF1 52567 94 - 1
ACUUUUUCUUUAUUUUCGUCUGUCGAUUUAG--UAACUAGUGGUGGCAACCAGCUGGUCCUAUCGAUAGGCACUGCUGCGGGUCUUCACCGCGGAA
.................((((((((((....--..(((((((((....)))).)))))...))))))))))....((((((.......)))))).. ( -33.80)
>DroEre_CAF1 53375 82 - 1
ACUUUUUCUUUAUUUUCGUGUGUCGAUUGGAUGGAACUAGUGGUGGCAAACAGCUGGUCCUAUCGAUAGCAAC-------------CACUACGGA-
..............((((((((..(..(.(((((.((((((.((.....)).)))))).))))).)...)...-------------))).)))))- ( -19.50)
>DroYak_CAF1 55838 95 - 1
ACUUUUUCUUUAUUUUCGUGUGUCGAUUUGAUGGAACUAGUGGUGGCAAACAGCUGGUCUUAUCGAUAGCCACUGCUGCGGGACUUCACUGCGGA-
.................(((.((....((((((..((((((.((.....)).))))))..))))))..)))))..((((((.......)))))).- ( -25.40)
>consensus
ACUUUUUCUUUAUUUUCGUCUGUCGAUUUAG__UAACUAGUGGUGGCAAACAGCUGGUCCUAUCGAUAGACACUGCUGCGGGUCUUCACCGCGGA_
.................((((((((((........((((((..((.....))))))))...))))))))))....((((((.......)))))).. (-20.00 = -22.00 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:40 2006